RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 LINC01565O15544 149 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 SELENOFO60613 162 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 CDC123O75794 336 aaPredicted RBP6.9□□□□□ -1.31
LIMA1-213ENST00000552720 SERPINI2O75830 405 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 GPR75O95800 540 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 CBX7O95931 251 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 WNT1P04628 370 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 POU2F2P09086 479 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 EPXP11678 715 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 PTHLHP12272 177 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 UQCRC1P31930 480 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 MAP3K8P41279 467 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 ACAA2P42765 397 aaKnown RBP6.9□□□□□ -1.31
LIMA1-213ENST00000552720 GDI2P50395 445 aaKnown RBP6.9□□□□□ -1.31
LIMA1-213ENST00000552720 P2RX3P56373 397 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 RPS11P62280 158 aaKnown RBP eCLIP6.9□□□□□ -1.31
LIMA1-213ENST00000552720 BTG1P62324 171 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 ST3GAL2Q16842 350 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF542PQ5EBM4 170 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 ALG10BQ5I7T1 473 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 BICRALQ6AI39 1079 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 PYHIN1Q6K0P9 492 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 GPALPP1Q8IXQ4 340 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 FAM98AQ8NCA5 519 aaKnown RBP6.9□□□□□ -1.31
LIMA1-213ENST00000552720 OR8H1Q8NGG4 311 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 C17orf50Q8WW18 174 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 KCTD12Q96CX2 325 aaKnown RBP6.9□□□□□ -1.31
LIMA1-213ENST00000552720 HYLS1Q96M11 299 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 GAS2L1Q99501 681 aaPredicted RBP6.9□□□□□ -1.31
LIMA1-213ENST00000552720 SLC25A18Q9H1K4 315 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 SFXN1Q9H9B4 322 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 FOLH1BQ9HBA9 442 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 TMEM27Q9HBJ8 222 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 DUSP22Q9NRW4 184 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 GDE1Q9NZC3 331 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 COPS3Q9UNS2 423 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 IER3IP1Q9Y5U9 82 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 NUP210LQ5VU65 1888 aa6.9□□□□□ -1.31
LIMA1-213ENST00000552720 A0A1W2PQF6 199 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 C7orf66A4D0T2 115 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 A6NCN8 305 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 KCNJ13O60928 360 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 RDH16O75452 317 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 DHFRP00374 187 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CELA2BP08218 269 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SSTR2P30874 369 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 OR3A3P47888 321 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CLDN12P56749 244 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 NRG3P56975 720 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 VSX2P58304 361 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 PSG6Q00889 435 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 TMEM255AQ5JRV8 349 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 KIRREL2Q6UWL6 708 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CREB3L2Q70SY1 520 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ABHD13Q7L211 337 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 TPRA1Q86W33 373 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SERPINA12Q8IW75 414 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CA13Q8N1Q1 262 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CAMKVQ8NCB2 501 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 LGALS14Q8TCE9 139 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF431Q8TF32 576 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 DACT3Q96B18 629 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ANKRD9Q96BM1 317 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 NMNAT3Q96T66 252 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ZFYVE21Q9BQ24 234 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CACNG6Q9BXT2 260 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 OR51J1Q9H342 316 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 DPAGT1Q9H3H5 408 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 TCEAL2Q9H3H9 227 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ANKRD10Q9NXR5 420 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 NKIRAS2Q9NYR9 191 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 GNG8Q9UK08 70 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 FLVCR2Q9UPI3 526 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SATB2Q9UPW6 733 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SEC16AO15027 2179 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 RP1P56715 2156 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 TRBV2A0A0J9YWF9 115 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ANKRD61A6NGH8 418 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ACOD1A6NK06 481 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 PRR32B1ATL7 298 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 TGFBR3LH3BV60 316 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 TNFSF14O43557 240 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 GMDSO60547 372 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 HOXB2P14652 356 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ENPP1P22413 925 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 STOMP27105 288 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 NFATC4Q14934 902 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 KIR2DS3Q14952 304 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CDK5R1Q15078 307 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ITPRIPL2Q3MIP1 535 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 HES5Q5TA89 166 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SFRP4Q6FHJ7 346 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 RPL13AP3Q6NVV1 102 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF613Q6PF04 617 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 RTL4Q6ZR62 310 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 RFPL4BQ6ZWI9 263 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SAMD14Q8IZD0 417 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 OR9A4Q8NGU2 314 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 HAVCR2Q8TDQ0 301 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 HMGB4Q8WW32 186 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms