RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TRAV18A0A075B6X5 111 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ZC3H12DA2A288 527 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 FZD7O75084 574 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 AGR2O95994 175 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 PAK4O96013 591 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 IGLV3-25P01717 112 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 PRR35P0CG20 571 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 DDX6P26196 483 aaKnown RBP eCLIP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 PCGF2P35227 344 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 DNASE1L1P49184 302 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 DLX2Q07687 328 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 RGS1Q08116 209 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 EXOSC2Q13868 293 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TSC22D1Q15714 1073 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 NDUFA9Q16795 377 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CLVS2Q5SYC1 327 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 MBNL2Q5VZF2 373 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 PYHIN1Q6K0P9 492 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ZC3H14Q6PJT7 736 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TAS1R1Q7RTX1 841 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 GPR155Q7Z3F1 870 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 GPR135Q8IZ08 494 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OR2C3Q8N628 320 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 HORMAD2Q8N7B1 307 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 MAFAQ8NHW3 353 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CNOT9Q92600 299 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 RGMAQ96B86 450 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ORAI1Q96D31 301 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CXorf40BQ96DE9 158 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 S100A13Q99584 98 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF416Q9BWM5 594 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ABCG4Q9H172 646 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ZMAT3Q9HA38 289 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 FANCFQ9NPI8 374 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 WASH6PQ9NQA3 447 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TDP1Q9NUW8 608 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF226Q9NYT6 803 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CNOT2Q9NZN8 540 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 HCFC2Q9Y5Z7 792 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 A0A0A6YYJ9 748 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SOCS6O14544 535 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TO15178 435 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SSX5O60225 188 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ITGA10O75578 1167 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 KRT33AO76009 404 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CTSAP10619 480 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 POLR2CP19387 275 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ELK1P19419 428 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 AK4P27144 223 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 AOAHP28039 575 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 MAP3K8P41279 467 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 GUCA1AP43080 201 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SLC11A1P49279 550 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TPMTP51580 245 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 STXBP1P61764 594 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SORDQ00796 357 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 PCGF3Q3KNV8 242 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 HLA-DQA1Q5Y7H0 255 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ACSM5Q6NUN0 579 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM17Q86X19 198 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF683Q8IZ20 524 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 FBXO15Q8NCQ5 510 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OR52E4Q8NGH9 312 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OR52E2Q8NGJ4 325 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OR52I1Q8NGK6 324 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OR5W2Q8NH69 310 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 RNASE11Q8TAA1 199 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 STOML3Q8TAV4 291 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 FANK1Q8TC84 345 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SLC7A13Q8TCU3 470 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 DUSP19Q8WTR2 217 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SLC38A5Q8WUX1 472 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 MAFIPQ8WZ33 124 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 PPP1R16AQ96I34 528 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OPALINQ96PE5 141 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CDCA3Q99618 268 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 KATNB1Q9BVA0 655 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SRRQ9GZT4 340 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 NOX3Q9HBY0 568 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 IFT46Q9NQC8 304 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ASAH2Q9NR71 780 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 B3GNT2Q9NY97 397 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CKLFQ9UBR5 152 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 DCHS1Q96JQ0 3298 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 MYOFQ9NZM1 2061 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CEP192Q8TEP8 1941 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SLC9B1P1A6NJY1 282 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ACOD1A6NK06 481 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 MCIDASD6RGH6 385 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 B3GALNT1O75752 331 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CDC123O75794 336 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 RCBTB2O95199 551 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SERPINA3P01011 423 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ACADMP11310 421 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 AKR1C4P17516 323 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TNFSF4P23510 183 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 HOXD9P28356 352 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CCR8P51685 355 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CTSCP53634 463 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CLPPQ16740 277 aaPredicted RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms