RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ADH1BP00325 375 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 HRGP04196 525 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 TRAPPC2P0DI81 140 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 TRAPPC2BP0DI82 140 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 EDNRAP25101 427 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 GDI2P50395 445 aaKnown RBP13.85□□□□□ -0.19
USP28-214ENST00000545540 BTG2P78543 158 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 RPL6Q02878 288 aaKnown RBP13.85□□□□□ -0.19
USP28-214ENST00000545540 LINGO2Q7L985 606 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 BRIX1Q8TDN6 353 aaKnown RBP13.85□□□□□ -0.19
USP28-214ENST00000545540 C1QTNF6Q9BXI9 259 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 MCCC2Q9HCC0 563 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 KLK11Q9UBX7 282 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 MED12Q93074 2177 aa13.85□□□□□ -0.19
USP28-214ENST00000545540 DBIP07108 87 aaKnown RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 ZNF3P17036 446 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 KIR2DL1P43626 348 aaPredicted RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 POU6F2P78424 691 aaPredicted RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 CEBPEQ15744 281 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 KIRREL2Q6UWL6 708 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 ELMOD2Q8IZ81 293 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 OR4C3Q8NH37 302 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 SIPA1Q96FS4 1042 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 OR10A4Q9H209 315 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 PILRAQ9UKJ1 303 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 SLC35A3Q9Y2D2 325 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 RP1P56715 2156 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 ZSCAN5BA6NJL1 495 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 SLC22A31A6NKX4 558 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 GATBO75879 557 aaKnown RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 F8A1P23610 371 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 RPS15P62841 145 aaKnown RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 ST3GAL2Q16842 350 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 FLVCR1-AS1Q8TAF5 88 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 SERINC2Q96SA4 455 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 CCDC3Q9BQI4 270 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 PBX4Q9BYU1 374 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 MED17Q9NVC6 651 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 SLCO1C1Q9NYB5 712 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 KLF15Q9UIH9 416 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 SLCO1B1Q9Y6L6 691 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 PRR32B1ATL7 298 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 DOK2O60496 412 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 EGFP01133 1207 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 MAOBP27338 520 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 OR3A3P47888 321 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 OC90Q02509 493 aaPredicted RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 ZNF267Q14586 743 aaPredicted RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 C9orf62Q8N4C0 152 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 ZNF527Q8NB42 609 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 SP7Q8TDD2 431 aaPredicted RBP13.84□□□□□ -0.19
USP28-214ENST00000545540 GIMAP1Q8WWP7 306 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 YIPF5Q969M3 257 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 NOX4Q9NPH5 578 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 FREM2Q5SZK8 3169 aa13.84□□□□□ -0.19
USP28-214ENST00000545540 NPR2P20594 1047 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 PRICKLE4Q2TBC4 344 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 GARNL3Q5VVW2 1013 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 PRAMEF8Q5VWM4 474 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 PRAMEF7Q5VXH5 474 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 USP53Q70EK8 1073 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 RSC1A1Q92681 617 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 CCDC120Q96HB5 630 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 ANKRD19PQ9H560 264 aa13.83□□□□□ -0.19
USP28-214ENST00000545540 KRCC1Q9NPI7 259 aaPredicted RBP13.83□□□□□ -0.19
USP28-214ENST00000545540 WDFY4Q6ZS81 3184 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 PLPP2O43688 288 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 GPR75O95800 540 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 F13BP05160 661 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 EN2P19622 333 aaPredicted RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 PSG6Q00889 435 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 EIPR1Q53HC9 387 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 PIAS4Q8N2W9 510 aaPredicted RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 DEFB119Q8N690 84 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 UXS1Q8NBZ7 420 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 GALNT6Q8NCL4 622 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 OR51Q1Q8NH59 317 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 ZC3HAV1LQ96H79 300 aaKnown RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 HSPA12BQ96MM6 686 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 ZFYVE21Q9BQ24 234 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 SPRTNQ9H040 489 aaPredicted RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 OR51J1Q9H342 316 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 SRA1Q9HD15 236 aaKnown RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 C2orf42Q9NWW7 574 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 PHF11Q9UIL8 331 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 RCE1Q9Y256 329 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 A0A1W2PQF6 199 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 TVP23AA6NH52 213 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 A8MUA0 341 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 TNFRSF10AO00220 468 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 PLRG1O43660 514 aaKnown RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 CBX7O95931 251 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 HK1P19367 917 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 ZNF81P51508 661 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 P2RX3P56373 397 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 PLA2G7Q13093 441 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 SNTB2Q13425 540 aaKnown RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 FHL5Q5TD97 284 aa13.83□□□□□ -0.2
USP28-214ENST00000545540 METAP1DQ6UB28 335 aaPredicted RBP13.83□□□□□ -0.2
USP28-214ENST00000545540 CSNK1A1LQ8N752 337 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms