RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 RNF13O43567 381 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 OR7A10O76100 309 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 IFNGP01579 166 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 CLUP10909 449 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 ZNF85Q03923 595 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 WBP2NLQ6ICG8 309 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 APOOLQ6UXV4 268 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 ZNF501Q96CX3 271 aaPredicted RBP12.61□□□□□ -0.39
RTN3-210ENST00000540798 TMEM43Q9BTV4 400 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 ZNF768Q9H5H4 540 aaKnown RBP12.61□□□□□ -0.39
RTN3-210ENST00000540798 FBXL4Q9UKA2 621 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 ZMIZ1Q9ULJ6 1067 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 A0A0C4DFX4 3053 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 MCIDASD6RGH6 385 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 TO15178 435 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 TPPPO94811 219 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 UTS2O95399 124 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 UBL4AP11441 157 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 ALAS2P22557 587 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 DCAF7P61962 342 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 KLHL12Q53G59 568 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 PRAMEF17Q5VTA0 474 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 DPY19L2P2Q6ZN68 376 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 LRRC17Q8N6Y2 441 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 POC5Q8NA72 575 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 TMED9Q9BVK6 235 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 SRRQ9GZT4 340 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 ZNF304Q9HCX3 659 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 NRIP3Q9NQ35 241 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 ZNF337Q9Y3M9 751 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 DAPL1A0PJW8 107 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 SHISA3A0PJX4 238 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ARPC3O15145 178 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 PRKNO60260 465 aaPredicted RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 REM1O75628 298 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 FBLP22087 321 aaKnown RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 MST1P26927 711 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ARL4DP49703 201 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.6□□□□□ -0.39
RTN3-210ENST00000540798 KANSL1Q7Z3B3 1105 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 HPS1Q92902 700 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ERMAPQ96PL5 475 aaPredicted RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 NDC1Q9BTX1 674 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 NUDT9Q9BW91 350 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 PNMTP11086 282 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 HIST1H1CP16403 213 aaKnown RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 CAPZA2P47755 286 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ZP2Q05996 745 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 KRR1Q13601 381 aaKnown RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 EBPQ15125 230 aaKnown RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 NUP54Q7Z3B4 507 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 CYB561A3Q8NBI2 242 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 SMPDL3BQ92485 455 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 AP3S1Q92572 193 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 NMNAT2Q9BZQ4 307 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 OR51V1Q9H2C8 321 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ABCB9Q9NP78 766 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 A0A1B0GX78 115 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 GTPBP1O00178 669 aaKnown RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 PLPP2O43688 288 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 DYRK3O43781 588 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ACTC1P68032 377 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ACTA1P68133 377 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 DBPQ10586 325 aaPredicted RBP12.6□□□□□ -0.39
RTN3-210ENST00000540798 C9orf40Q8IXQ3 194 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 GPALPP1Q8IXQ4 340 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 OR14A16Q8NHC5 309 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 ZNF524Q96C55 264 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 HDHD5Q9BXW7 423 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 OR8D2Q9GZM6 311 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 C12orf10Q9HB07 376 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 TRIM36Q9NQ86 728 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 MUTYHQ9UIF7 546 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 TBC1D24Q9ULP9 559 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 CLCA3PQ9Y6N3 262 aa12.6□□□□□ -0.39
RTN3-210ENST00000540798 LRRN3E7EW58 273 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 SCDO00767 359 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 TOX3O15405 576 aaPredicted RBP12.59□□□□□ -0.39
RTN3-210ENST00000540798 RGS5O15539 181 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 ZNF264O43296 627 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 IDH3BO43837 385 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 RGS9O75916 674 aaPredicted RBP12.59□□□□□ -0.39
RTN3-210ENST00000540798 MT-ND5P03915 603 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 SPNP16150 400 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 SQSTM1Q13501 440 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 CBLN3Q6UW01 205 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 MAMSTRQ6ZN01 415 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 PRR23CQ6ZRP0 262 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 MARCH9Q86YJ5 346 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 ZNF441Q8N8Z8 693 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 OR10H4Q8NGA5 316 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 SETD6Q8TBK2 473 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 ELF4Q99607 663 aaPredicted RBP12.59□□□□□ -0.39
RTN3-210ENST00000540798 SOSTQ9BQB4 213 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 IER2Q9BTL4 223 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 LRRN3Q9H3W5 708 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 RERGLQ9H628 205 aa12.59□□□□□ -0.39
RTN3-210ENST00000540798 MRTO4Q9UKD2 239 aaKnown RBP12.59□□□□□ -0.39
RTN3-210ENST00000540798 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.59□□□□□ -0.39
RTN3-210ENST00000540798 A0A1W2PQL4 384 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms