RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 IL18BPO95998 194 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 SOD3P08294 240 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 LAMP1P11279 417 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 MPZP25189 248 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 IL2RGP31785 369 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 ARL2P36404 184 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TNFSF9P41273 254 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 UBE2MP61081 183 aaKnown RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 NKAIN2Q5VXU1 208 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 KIAA1161Q6NSJ0 714 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 SERPINA13PQ6UXR4 307 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PPP1R3BQ86XI6 285 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 HIST3H2BBQ8N257 126 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 BPIFB2Q8N4F0 458 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 KCNRGQ8N5I3 272 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 AQP11Q8NBQ7 271 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 RHEBL1Q8TAI7 183 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 ZCCHC10Q8TBK6 192 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 HAVCR2Q8TDQ0 301 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 CCDC107Q8WV48 283 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 FDXACB1Q9BRP7 624 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 LRRN3Q9H3W5 708 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TPT1P8Q9HAU6 139 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 HRASLSQ9HDD0 168 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 MMP26Q9NRE1 261 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 NUP205Q92621 2012 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3DA0A087WVF3 549 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3IA0A087WXS9 549 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3EA0A087X179 549 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3KA0A087X1G2 549 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 A0A1W2PQ45 241 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 A0A1W2PQY0 241 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 C17orf102A2RUQ5 167 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 FAM183AA6NL82 134 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 HEPACAM2A8MVW5 462 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 NUDT19A8MXV4 375 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3LB9A6J9 549 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 SMAD6O43541 496 aaKnown RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PCDH8O95206 1070 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 HLA-DPB1P04440 258 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 GJB1P08034 283 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 CD79AP11912 226 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PKMP14618 531 aaKnown RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 DAOP14920 347 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 CHRNA4P43681 627 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 CSNK1DP48730 415 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 ERVPABLB-1P60509 514 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 SLC6A3Q01959 620 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PJVKQ0ZLH3 352 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PAFAH1B3Q15102 231 aaKnown RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3CQ6IPX1 549 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PRSS45Q7RTY3 260 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 SCD5Q86SK9 330 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PEG10Q86TG7 708 aaKnown RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3Q8IZP1 549 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 SPPL2AQ8TCT8 520 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TFGQ92734 400 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 THOC3Q96J01 351 aaKnown RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TEX101Q9BY14 249 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 ZFYVE1Q9HBF4 777 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TESQ9UGI8 421 aaKnown RBP8.76□□□□□ -1.01
CLIP1-214ENST00000540539 CACFD1Q9UGQ2 172 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 PPT2Q9UMR5 302 aa8.76□□□□□ -1.01
CLIP1-214ENST00000540539 TMEM129A0AVI4 362 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 MBLAC1A4D2B0 266 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-214ENST00000540539 OR5H15A6NDH6 313 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3BA6NDS4 549 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 OR5H1A6NKK0 313 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 M0QZK8 103 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 KERAO60938 352 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 ECI2O75521 394 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 PRAMEF12O95522 483 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 IL5P05113 134 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 IGFBP1P08833 259 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-214ENST00000540539 FGF7P21781 194 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 AQP1P29972 269 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 HOXC8P31273 242 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 CEACAM8P31997 349 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-214ENST00000540539 APLNRP35414 380 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 GSK3AP49840 483 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 TIAL1Q01085 375 aaKnown RBP eCLIP8.75□□□□□ -1.01
CLIP1-214ENST00000540539 RING1Q06587 406 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 ZNF805Q5CZA5 627 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 ELFN2Q5R3F8 820 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 TBC1D3GQ6DHY5 549 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 OR2A2Q6IF42 318 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 PRICKLE2Q7Z3G6 844 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 NRROSQ86YC3 692 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 GTPBP8Q8N3Z3 284 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-214ENST00000540539 LINC01465Q8N7H1 131 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 TCEANCQ8N8B7 351 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 FBXO15Q8NCQ5 510 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-214ENST00000540539 IP6K3Q96PC2 410 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 TBL1YQ9BQ87 522 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 UBQLN3Q9H347 655 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 TMEM27Q9HBJ8 222 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 TMEM272A0A1B0GTI8 110 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 C7orf77A4D0Y5 90 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 SOX14O95416 240 aa8.75□□□□□ -1.01
CLIP1-214ENST00000540539 RPLP1P05386 114 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms