RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PPP1R32Q7Z5V6 425 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 LYG2Q86SG7 212 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 GGNQ86UU5 652 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 THOC6Q86W42 341 aaKnown RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 CNTN4Q8IWV2 1026 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 BAP18Q8IXM2 172 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 NRMQ8IXM6 262 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 KATNAL2Q8IYT4 538 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 ADGRF3Q8IZF5 1079 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 PUSL1Q8N0Z8 303 aaKnown RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 PRELID2Q8N945 189 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 OR2AP1Q8NGE2 309 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 OR13C8Q8NGS7 320 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 TRMT10AQ8TBZ6 339 aaKnown RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 CD200R1Q8TD46 325 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 CSGALNACT1Q8TDX6 532 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 FAM222BQ8WU58 562 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 FAR1Q8WVX9 515 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 CYGBQ8WWM9 190 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 PIGBQ92521 554 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 PHYHIPQ92561 330 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 MRPS31Q92665 395 aaKnown RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 CDS1Q92903 461 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 TMEM125Q96AQ2 219 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 SPSB1Q96BD6 273 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 HAVCR1Q96D42 359 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 FAM120BQ96EK7 910 aaKnown RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 OTUB1Q96FW1 271 aaPredicted RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 CERS2Q96G23 380 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 P2RY11Q96G91 374 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 SENP8Q96LD8 212 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 PRRC1Q96M27 445 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 TMEM56Q96MV1 263 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 SLC46A1Q96NT5 459 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 TRIM51Q9BSJ1 452 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 RIOK2Q9BVS4 552 aaKnown RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 TPPP3Q9BW30 176 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 IFT27Q9BW83 186 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 SEC11CQ9BY50 192 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 ALOXE3Q9BYJ1 711 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 ELOVL4Q9GZR5 314 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 SLC38A1Q9H2H9 487 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 DPEP2Q9H4A9 486 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 DECR2Q9NUI1 292 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 HCN3Q9P1Z3 774 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 DHCR7Q9UBM7 475 aaKnown RBP5.07□□□□□ -1.6
CD44-236ENST00000533222 DKK2Q9UBU2 259 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 FBXL2Q9UKC9 423 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 PITPNC1Q9UKF7 332 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 SLC35A3Q9Y2D2 325 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 WIF1Q9Y5W5 379 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 TMEM56-RWDD3S4R434 201 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 MRC1P22897 1456 aa5.07□□□□□ -1.6
CD44-236ENST00000533222 PRG4Q92954 1404 aaPredicted RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 IGSF9BQ9UPX0 1349 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 MEIKINA0A087WXM9 373 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 NPIPA5A0A0B4J1W7 369 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 TRBV11-1A0A0K0K1C0 115 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 A0A1W2PRV1 198 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 COLCA2A8K830 154 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 EFCAB9A8MZ26 197 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 TMEM233B4DJY2 109 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 NPIPA5E9PKD4 350 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 NPIPA3F8WFD2 350 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 TGFB1I1O43294 461 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 NME2P1O60361 137 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 TBX19O60806 448 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 TAF5LO75529 589 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 RGS11O94810 467 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 MPC2O95563 127 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 ACSL3O95573 720 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 IGHEP01854 428 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 CSTBP04080 98 aaKnown RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 RPN2P04844 631 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 THP07101 528 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 HMBSP08397 361 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 H2AFZP0C0S5 128 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 UQCRFS1P1P0C7P4 283 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 SLC2A2P11168 524 aaPredicted RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 C6P13671 934 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 ZNF44P15621 663 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 ZNF7P17097 686 aaPredicted RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 CSNK2A2P19784 350 aaPredicted RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 MAGP20916 626 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 CD82P27701 267 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 HTR2CP28335 458 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 ADORA2AP29274 412 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 POLR2IP36954 125 aaKnown RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 CD200P41217 278 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 IDH2P48735 452 aaKnown RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 PDLIM4P50479 330 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 CLDN18P56856 261 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 UBE2G2P60604 165 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 RPS6P62753 249 aaKnown RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 SSBP2P81877 361 aaPredicted RBP5.06□□□□□ -1.6
CD44-236ENST00000533222 SCAPQ12770 1279 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 PPIGQ13427 754 aaKnown RBP eCLIP5.06□□□□□ -1.6
CD44-236ENST00000533222 GTF2H2Q13888 395 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 PRPSAP1Q14558 356 aa5.06□□□□□ -1.6
CD44-236ENST00000533222 UBE2SQ16763 222 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms