RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ENPP1P22413 925 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 HTR2AP28223 471 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 CPOXP36551 454 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 DIO1P49895 249 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 MYBPHQ13203 477 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 RNPS1Q15287 305 aaKnown RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 ELOA3BQ3SY89 546 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 ZNF613Q6PF04 617 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 C5orf46Q6UWT4 87 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 MAMDC2Q7Z304 686 aaPredicted RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 NAXEQ8NCW5 288 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 RBM15BQ8NDT2 890 aaKnown RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 ELOA3Q8NG57 546 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 OR6T1Q8NGN1 323 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 STK35Q8TDR2 534 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 INTS12Q96CB8 462 aaKnown RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 ZHX1-C8orf76Q96EF9 292 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 LRRC46Q96FV0 321 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 MCHR1Q99705 422 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 POLR2J2Q9GZM3 115 aaKnown RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 PCDHAC1Q9H158 963 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 POLR2J3Q9H1A7 115 aaKnown RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 PIGMQ9H3S5 423 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 GP6Q9HCN6 339 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 CHST11Q9NPF2 352 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 CD300AQ9UGN4 299 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 SH3GLB1Q9Y371 365 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 A0A0B4J2E0 115 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 A0A1B0GX12 115 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 M0R3H8 397 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 TPST2O60704 377 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 EIF1BO60739 113 aaKnown RBP12.77□□□□□ -0.37
NUP54-216ENST00000514901 AQP8O94778 261 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 AGFG1P52594 562 aaKnown RBP12.77□□□□□ -0.37
NUP54-216ENST00000514901 SLC35A1P78382 337 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 FXNQ16595 210 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 ZNF239Q16600 458 aaKnown RBP12.77□□□□□ -0.37
NUP54-216ENST00000514901 ALG10BQ5I7T1 473 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 GLYATQ6IB77 296 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 PPP4R4Q6NUP7 873 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 CBLL1Q75N03 491 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 FCRLAQ7L513 359 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 CARM1Q86X55 608 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 MCEMP1Q8IX19 187 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 SLC38A4Q969I6 547 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 FAM162AQ96A26 154 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 GMPPAQ96IJ6 420 aaPredicted RBP12.77□□□□□ -0.37
NUP54-216ENST00000514901 TPD52L3Q96J77 140 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 TACO1Q9BSH4 297 aaKnown RBP12.77□□□□□ -0.37
NUP54-216ENST00000514901 SRXN1Q9BYN0 137 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 GORASP2Q9H8Y8 452 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 GMPR2Q9P2T1 348 aaKnown RBP12.77□□□□□ -0.37
NUP54-216ENST00000514901 RPS6KA6Q9UK32 745 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 MPDZO75970 2070 aa12.77□□□□□ -0.37
NUP54-216ENST00000514901 KIAA1549Q9HCM3 1950 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 A0A087WUJ7 227 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 A0A1W2PNV4 684 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 TMEM229AB2RXF0 380 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 NPIPB7O75200 414 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 PRKD3O94806 890 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 CLDN1O95832 211 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 PLGP00747 810 aaPredicted RBP12.76□□□□□ -0.37
NUP54-216ENST00000514901 GPIP06744 558 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 BMP5P22003 454 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 OR2B6P58173 313 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 ENTPD8Q5MY95 495 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 PLXDC2Q6UX71 529 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 LIX1LQ8IVB5 337 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 RNF148Q8N7C7 305 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 VANGL1Q8TAA9 524 aaPredicted RBP12.76□□□□□ -0.37
NUP54-216ENST00000514901 RNF128Q8TEB7 428 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 ROBO4Q8WZ75 1007 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 ARL5BQ96KC2 179 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 WFDC6Q9BQY6 131 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 NAA11Q9BSU3 229 aaPredicted RBP12.76□□□□□ -0.37
NUP54-216ENST00000514901 PRR14Q9BWN1 585 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 TAPBPLQ9BX59 468 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 OR11A1Q9GZK7 315 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 EGFL7Q9UHF1 273 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 MAGEL2Q9UJ55 1249 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 EMC9Q9Y3B6 208 aa12.76□□□□□ -0.37
NUP54-216ENST00000514901 ZC3H12DA2A288 527 aaKnown RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 TRAPPC13A5PLN9 417 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 FAM90A27PA6NNH2 459 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 OR2T1O43869 369 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 CYTIPO60759 359 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 SS18L1O75177 396 aaPredicted RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 UBOX5O94941 541 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 ZNF682O95780 498 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 SERPINA1P01009 418 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 IFNA8P32881 189 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 IDUAP35475 653 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 KIR2DL2P43627 348 aaPredicted RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 CDH12P55289 794 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 CTBP2P56545 445 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 FOXF2Q12947 444 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 BNIP2Q12982 314 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 PDK3Q15120 406 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 GUSBP1Q15486 140 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 NPTX1Q15818 432 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms