RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	DNAJA3	Q96EY1	480 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF347	Q96SE7	839 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	PIP5K1A	Q99755	562 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	YY1AP1	Q9H869	796 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TIGAR	Q9NQ88	270 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	PAQR5	Q9NXK6	330 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TINAG	Q9UJW2	476 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	HDGFL3	Q9Y3E1	203 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZC3H12D	A2A288	527 aa	Known RBP	13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	ADAMDEC1	O15204	470 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	AHSA1	O95433	338 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	MT-ND1	P03886	318 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	THY1	P04216	161 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	PTN	P21246	168 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	ACVR2A	P27037	513 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	PTGER4	P35408	488 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	IDUA	P35475	653 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	UQCRFS1	P47985	274 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	CARD18	P57730	90 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	TRAM2	Q15035	370 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	CTU2	Q2VPK5	515 aa	Known RBP	13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	EMC4	Q5J8M3	183 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	C5orf46	Q6UWT4	87 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	PIWIL3	Q7Z3Z3	882 aa	Known RBP	13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	TSEN54	Q7Z6J9	526 aa	Known RBP	13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	DOLPP1	Q86YN1	238 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	OR10D3	Q8NH80	312 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	PRR7	Q8TB68	274 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	STK35	Q8TDR2	534 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	ARL5B	Q96KC2	179 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	TRIB1	Q96RU8	372 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	EPYC	Q99645	322 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	TUBA1C	Q9BQE3	449 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	TESMIN	Q9Y4I5	508 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	NBAS	A2RRP1	2371 aa		13.09	□□□□□ -0.31
BRCA1-223	ENST00000494123	SULT2B1	O00204	365 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	FFAR1	O14842	300 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	CXCL13	O43927	109 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	LYPD3	O95274	346 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	H1F0	P07305	194 aa	Known RBP	13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	HOXD4	P09016	255 aa	Predicted RBP	13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	MAGEA2	P43356	314 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	SMIM11A	P58511	58 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	CSNK2A1	P68400	391 aa	Predicted RBP	13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	SPIB	Q01892	262 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	MYBPH	Q13203	477 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	CCNI	Q14094	377 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	KPNB1	Q14974	876 aa	Known RBP	13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	EIF2S3L	Q2VIR3	472 aa	Known RBP	13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	FGD3	Q5JSP0	725 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	C1orf185	Q5T7R7	199 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	C1orf140	Q5VVS0	124 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	LINC00114	Q6XXX2	140 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	C3P1	Q6ZMU1	363 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	LSR	Q86X29	649 aa	Predicted RBP	13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	P3H2	Q8IVL5	708 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	NKAIN4	Q8IVV8	208 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	ZPLD1	Q8TCW7	415 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	OSTF1	Q92882	214 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	ADGRG7	Q96K78	797 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	PRSS27	Q9BQR3	290 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	TMEM43	Q9BTV4	400 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	CHID1	Q9BWS9	393 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	TAPBPL	Q9BX59	468 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	POTEKP	Q9BYX7	375 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	COQ10B	Q9H8M1	238 aa		13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	NMNAT1	Q9HAN9	279 aa	Predicted RBP	13.08	□□□□□ -0.32
BRCA1-223	ENST00000494123	CLCA1	A8K7I4	914 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	KPNA4	O00629	521 aa	Predicted RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	PRSS23	O95084	383 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	SYNGR4	O95473	234 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	GTF2E2	P29084	291 aa	Known RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	RRM2	P31350	389 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	RBM34	P42696	430 aa	Known RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	CA7	P43166	264 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	RPS5	P46782	204 aa	Known RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	DIO1	P49895	249 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	ACTR3	P61158	418 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	EGR4	Q05215	589 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	ACSF3	Q4G176	576 aa	Predicted RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	IQCC	Q4KMZ1	466 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	C1QL3	Q5VWW1	255 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	WDR88	Q6ZMY6	472 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	TMPPE	Q6ZT21	453 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	PIK3C3	Q8NEB9	887 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	TMEM255B	Q8WV15	326 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	TMEM239	Q8WW34	195 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	ZHX1-C8orf76	Q96EF9	292 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	ZNF845	Q96IR2	970 aa	Predicted RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	HS6ST2	Q96MM7	605 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	PRRG4	Q9BZD6	226 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	ANKRD19P	Q9H560	264 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	CCM2L	Q9NUG4	571 aa	Predicted RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	MCTS1	Q9ULC4	181 aa	Known RBP	13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	MPDZ	O75970	2070 aa		13.07	□□□□□ -0.32
BRCA1-223	ENST00000494123	IGKV1D-42	A0A075B6H8	117 aa		13.06	□□□□□ -0.32
BRCA1-223	ENST00000494123	TRAV36DV7	A0A075B6V5	113 aa		13.06	□□□□□ -0.32
BRCA1-223	ENST00000494123	ANKRD65	E5RJM6	399 aa		13.06	□□□□□ -0.32
BRCA1-223	ENST00000494123	OR2T1	O43869	369 aa		13.06	□□□□□ -0.32
BRCA1-223	ENST00000494123	FKBP6	O75344	327 aa		13.06	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms