RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ING1Q9UK53 422 aaPredicted RBP13.4□□□□□ -0.26
USP39-217ENST00000491659 TRAPPC4Q9Y296 219 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 ABCA4P78363 2273 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 IGKV3D-15A0A087WSY6 115 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 EVPLLA8MZ36 301 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 ANGPT2O15123 496 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 EIF1BO60739 113 aaKnown RBP13.39□□□□□ -0.27
USP39-217ENST00000491659 ADAP00813 363 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 THBDP07204 575 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 ETS2P15036 469 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 P2RY6Q15077 328 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 DEFB113Q30KQ7 82 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 SFRP5Q5T4F7 317 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 Q6ZT83 130 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 C22orf34Q6ZV56 151 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 NFKBIDQ8NI38 313 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 KISS1RQ969F8 398 aaPredicted RBP13.39□□□□□ -0.27
USP39-217ENST00000491659 S100PBPQ96BU1 408 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 ZNF775Q96BV0 537 aaPredicted RBP13.39□□□□□ -0.27
USP39-217ENST00000491659 NAA11Q9BSU3 229 aaPredicted RBP13.39□□□□□ -0.27
USP39-217ENST00000491659 UBTD1Q9HAC8 227 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 SLC52A3Q9NQ40 469 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 SLAMF8Q9P0V8 285 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 FREM1Q5H8C1 2179 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 F8P00451 2351 aa13.39□□□□□ -0.27
USP39-217ENST00000491659 TRBV5-3A0A0A0MS03 114 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.38□□□□□ -0.27
USP39-217ENST00000491659 ZNF716A6NP11 495 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 GPR171O14626 319 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 PGM3O95394 542 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 IDUAP35475 653 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 ACAA2P42765 397 aaKnown RBP13.38□□□□□ -0.27
USP39-217ENST00000491659 NR1H2P55055 460 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 CDK6Q00534 326 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 ITGADQ13349 1161 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.38□□□□□ -0.27
USP39-217ENST00000491659 DHDDSQ86SQ9 333 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 SERPINA11Q86U17 422 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 KRT73Q86Y46 540 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 CLIP4Q8N3C7 705 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 SLC35B4Q969S0 331 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 HS3ST6Q96QI5 342 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 USB1Q9BQ65 265 aaKnown RBP13.38□□□□□ -0.27
USP39-217ENST00000491659 SPATA5L1Q9BVQ7 753 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 POTEKPQ9BYX7 375 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 ADAM19Q9H013 955 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 ZNF385DQ9H6B1 395 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 PRSS50Q9UI38 385 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 NOSIPQ9Y314 301 aaKnown RBP13.38□□□□□ -0.27
USP39-217ENST00000491659 NDUFAF1Q9Y375 327 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 GMEB1Q9Y692 573 aa13.38□□□□□ -0.27
USP39-217ENST00000491659 RAI1Q7Z5J4 1906 aaPredicted RBP13.38□□□□□ -0.27
USP39-217ENST00000491659 CELSR1Q9NYQ6 3014 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 ZC3H12DA2A288 527 aaKnown RBP13.37□□□□□ -0.27
USP39-217ENST00000491659 ZNF814B7Z6K7 855 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 CNOT4O95628 575 aaKnown RBP13.37□□□□□ -0.27
USP39-217ENST00000491659 GPIP06744 558 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 TROVE2P10155 538 aaKnown RBP eCLIP13.37□□□□□ -0.27
USP39-217ENST00000491659 IMPDH2P12268 514 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 PRG2P13727 222 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 CD53P19397 219 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 FPR1P21462 350 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 PRKAR1BP31321 381 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 SLC16A1P53985 500 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 SCARB2Q14108 478 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 TSC22D1Q15714 1073 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 ALKBH2Q6NS38 261 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 REEP3Q6NUK4 255 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 BHLHA15Q7RTS1 189 aaPredicted RBP13.37□□□□□ -0.27
USP39-217ENST00000491659 APH1AQ96BI3 265 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 PLPPR2Q96GM1 343 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 CPPED1Q9BRF8 314 aaPredicted RBP13.37□□□□□ -0.27
USP39-217ENST00000491659 TAPBPLQ9BX59 468 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 TMEM38AQ9H6F2 299 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 NGBQ9NPG2 151 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 BEX4Q9NWD9 120 aaPredicted RBP13.37□□□□□ -0.27
USP39-217ENST00000491659 ANGPT4Q9Y264 503 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 SLC9A8Q9Y2E8 581 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 CHST2Q9Y4C5 530 aa13.37□□□□□ -0.27
USP39-217ENST00000491659 A8MVM7 634 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 KLF4O43474 513 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 ATP8B1O43520 1251 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 FRS3O43559 492 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 LYZL6O75951 148 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 GPX2P18283 190 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 SLC6A2P23975 617 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 LOXP28300 417 aaPredicted RBP13.36□□□□□ -0.27
USP39-217ENST00000491659 H3F3AP84243 136 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 OR7A5Q15622 319 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 HSP90B2PQ58FF3 399 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 METTL21CQ5VZV1 264 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 PAQR6Q6TCH4 344 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 DLEU7Q6UYE1 221 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 C20orf204Q6ZNR8 217 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 CCDC103Q8IW40 242 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 UBE2J2Q8N2K1 259 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 C10orf111Q8N326 155 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 DPP10Q8N608 796 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 TSPEARQ8WU66 669 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 HSD17B8Q92506 261 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms