RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 MTDHQ86UE4 582 aaKnown RBP16.09■□□□□ 0.17
COL9A3-214ENST00000490398 CXorf67Q86X51 503 aaPredicted RBP16.09■□□□□ 0.17
COL9A3-214ENST00000490398 ZNF440Q8IYI8 595 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 GABRG1Q8N1C3 465 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 SLC43A2Q8N370 569 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 C3orf49Q96BT1 292 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 HS3ST6Q96QI5 342 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 MED18Q9BUE0 208 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 TMEM38AQ9H6F2 299 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 PLEKHF2Q9H8W4 249 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 KLHL9Q9P2J3 617 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 ZNF232Q9UNY5 417 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 IFT52Q9Y366 437 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 HDGFL3Q9Y3E1 203 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 MAP1AP78559 2803 aaPredicted RBP16.09■□□□□ 0.17
COL9A3-214ENST00000490398 ABCA4P78363 2273 aa16.08■□□□□ 0.17
COL9A3-214ENST00000490398 EVPLLA8MZ36 301 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 ZNF208O43345 1280 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 ETS2P15036 469 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 HTR2AP28223 471 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 LOXP28300 417 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-214ENST00000490398 MDH1P40925 334 aaKnown RBP16.08■□□□□ 0.16
COL9A3-214ENST00000490398 IST1P53990 364 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 CSNK2A1P68400 391 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-214ENST00000490398 NFYCQ13952 458 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 HSP90B2PQ58FF3 399 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 WBP2NLQ6ICG8 309 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 ZNF317Q96PQ6 595 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-214ENST00000490398 GP6Q9HCN6 339 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 MED4Q9NPJ6 270 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 TMEM181Q9P2C4 612 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 ST6GALNAC2Q9UJ37 374 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 PLEKHA6Q9Y2H5 1048 aa16.08■□□□□ 0.16
COL9A3-214ENST00000490398 HIVEP1P15822 2718 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 ENO4A6NNW6 628 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 FXYD1O00168 92 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 CASKO14936 926 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 FPR1P21462 350 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 CRYGSP22914 178 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 PRKAR1BP31321 381 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 OR3A2P47893 321 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 CLK1P49759 484 aaKnown RBP16.07■□□□□ 0.16
COL9A3-214ENST00000490398 GZMMP51124 257 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 H3F3AP84243 136 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 DMTNQ08495 405 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 FBXW10Q5XX13 1052 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 DHRS4L2Q6PKH6 230 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 BEND4Q6ZU67 534 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 ATG4DQ86TL0 474 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-214ENST00000490398 TSPEARQ8WU66 669 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 C10orf82Q8WW14 230 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 PIF1Q9H611 641 aa16.07■□□□□ 0.16
COL9A3-214ENST00000490398 CCM2LQ9NUG4 571 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-214ENST00000490398 IGKV3D-15A0A087WSY6 115 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 ZNF724A8MTY0 619 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 TMEM229AB2RXF0 380 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 TPST2O60704 377 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 ADAP00813 363 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 IGHV3-9P01782 118 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 UQCRBP14927 111 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 CXCR1P25024 350 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 PCBP3P57721 371 aaKnown RBP16.06■□□□□ 0.16
COL9A3-214ENST00000490398 CEACAM7Q14002 265 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 HIPK4Q8NE63 616 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 S100PBPQ96BU1 408 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 DDIT4LQ96D03 193 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 PIK3IP1Q96FE7 263 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 ACTR6Q9GZN1 396 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 KAT8Q9H7Z6 458 aaKnown RBP16.06■□□□□ 0.16
COL9A3-214ENST00000490398 ARMCX1Q9P291 453 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 USP22Q9UPT9 525 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 TRAPPC4Q9Y296 219 aa16.06■□□□□ 0.16
COL9A3-214ENST00000490398 TEP1Q99973 2627 aaKnown RBP16.06■□□□□ 0.16
COL9A3-214ENST00000490398 FREM1Q5H8C1 2179 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 LOC100653049A0A140TA62 436 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 LIPT2A6NK58 231 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 KLF4O43474 513 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 NPIPB7O75200 414 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 KRT34O76011 436 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 MFN2O95140 757 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 AKR7A3O95154 331 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 OPN1SWP03999 348 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 PSMB1P20618 241 aaKnown RBP16.05■□□□□ 0.16
COL9A3-214ENST00000490398 SLC6A2P23975 617 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 COPZ1P61923 177 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 OR7A5Q15622 319 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 CYP51A1Q16850 503 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 ZSWIM7Q19AV6 140 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 RABL3Q5HYI8 236 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 REP15Q6BDI9 236 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 NANOGP8Q6NSW7 305 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 NET1Q7Z628 596 aaPredicted RBP16.05■□□□□ 0.16
COL9A3-214ENST00000490398 STK32CQ86UX6 486 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 SNX32Q86XE0 403 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 TMEM99Q8N816 258 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 SMYD1Q8NB12 490 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 GPR32P1Q8NGA4 272 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 OR10A6Q8NH74 314 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 NANOGQ9H9S0 305 aa16.05■□□□□ 0.16
COL9A3-214ENST00000490398 CACYBPQ9HB71 228 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms