RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 WDR13Q9H1Z4 485 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 NEUROG2Q9H2A3 272 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 FARSBQ9NSD9 589 aaKnown RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 PLCXD1Q9NUJ7 323 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 PAK5Q9P286 719 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ASIC3Q9UHC3 531 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF490Q9ULM2 529 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 SNX6Q9UNH7 406 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 DUSP12Q9UNI6 340 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 FOXJ3Q9UPW0 622 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TCF19Q9Y242 345 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 WIPI2Q9Y4P8 454 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 KLF2Q9Y5W3 355 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-216ENST00000487043 MTCH2Q9Y6C9 303 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 DOCK4Q8N1I0 1966 aa3.4□□□□□ -1.87
PTCD3-216ENST00000487043 TNRC18O15417 2968 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 DOCK6Q96HP0 2047 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ATG2AQ2TAZ0 1938 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 CXorf51AA0A1B0GTR3 108 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ERI2A8K979 691 aaKnown RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GPR89AB7ZAQ6 455 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 KCNK1O00180 336 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 DFFAO00273 331 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 E2F3O00716 465 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 TRDMT1O14717 391 aaKnown RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 SLC9A3R1O14745 358 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ALOX15BO15296 676 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 LINC01565O15544 149 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 KDELR3O43731 214 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GMFGO60234 142 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 CACNG3O60359 315 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 TSPAN2O60636 221 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 TBL1XO60907 577 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF432O94892 652 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 OR4F21O95013 312 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 JCHAINP01591 159 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 RHOCP08134 193 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GSTA1P08263 222 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GPR89BP0CG08 455 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 CCNB1P14635 433 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 CD1DP15813 335 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 PRKACGP22612 351 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 HNRNPA2B1P22626 353 aaKnown RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 EDNRAP25101 427 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 DPP4P27487 766 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 FDFT1P37268 417 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 PTGFRP43088 359 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 MAGEA6P43360 314 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZFP36L2P47974 494 aaKnown RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 SGSHP51688 502 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 PLK1P53350 603 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 RPS24P62847 133 aaKnown RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 RPS27AP62979 156 aaKnown RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 CDK16Q00536 496 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 NAAAQ02083 359 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GNA12Q03113 381 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 SRYQ05066 204 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 SNTB2Q13425 540 aaKnown RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 KCNJ11Q14654 390 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF77Q15935 545 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZSWIM7Q19AV6 140 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 PARP15Q460N3 678 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 NADK2Q4G0N4 442 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 FAM78AQ5JUQ0 283 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ADAMTSL4-AS1Q5T5F5 129 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 WLSQ5T9L3 541 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 MARC1Q5VT66 337 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 KDELC1Q6UW63 502 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 RGS9BPQ6ZS82 235 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 P4HA3Q7Z4N8 544 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 TMEM25Q86YD3 366 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GRAMD2AQ8IUY3 354 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 BBS7Q8IWZ6 715 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 KLHDC8BQ8IXV7 354 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GCNT2Q8N0V5 402 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF567Q8N184 647 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 MREGQ8N565 214 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ATPAF2Q8N5M1 289 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 GVQW1Q8N7I0 195 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF557Q8N988 423 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 FADS6Q8N9I5 356 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 CHDHQ8NE62 594 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 OR52B6Q8NGF0 335 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 FBXO30Q8TB52 745 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF519Q8TB69 540 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 DDI1Q8WTU0 396 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 FGF13Q92913 245 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 SMARCD2Q92925 531 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 LRR1Q96L50 414 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 PRICKLE1Q96MT3 831 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 TTC25Q96NG3 672 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ZNF599Q96NL3 588 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 ALKBH3Q96Q83 286 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-216ENST00000487043 TNFRSF13CQ96RJ3 184 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 FMO2Q99518 471 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 RAB11FIP5Q9BXF6 653 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 RAB33BQ9H082 229 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 LINC00597Q9H2U6 94 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 IL1RAPQ9NPH3 570 aa3.39□□□□□ -1.87
PTCD3-216ENST00000487043 RBM22Q9NW64 420 aaKnown RBP eCLIP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms