RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CCND2P30279 289 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 MAGEA6P43360 314 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ACADSBP45954 432 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 RPL14P50914 215 aaKnown RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 MRPS15P82914 257 aaKnown RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 ROR1Q01973 937 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 GABPAQ06546 454 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 MERTKQ12866 999 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 PEX6Q13608 980 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 FASTKQ14296 549 aaKnown RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 TPSAB1Q15661 275 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 PSMD5Q16401 504 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ECSCRQ19T08 205 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 TIMM50Q3ZCQ8 353 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 EIPR1Q53HC9 387 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 PIGGQ5H8A4 983 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 TMEM64Q6YI46 380 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 SIGLEC15Q6ZMC9 328 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ZNF767PQ75MW2 155 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 EFL1Q7Z2Z2 1120 aaKnown RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 ADCK1Q86TW2 530 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CACUL1Q86Y37 369 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CDKL3Q8IVW4 592 aaPredicted RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 TUSC5Q8IXB3 177 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CLEC4FQ8N1N0 589 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ZNF786Q8N393 782 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CHCHD4Q8N4Q1 142 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ASCC1Q8N9N2 400 aaKnown RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 SUMF1Q8NBK3 374 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 NCLNQ969V3 563 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 AURKBQ96GD4 344 aaPredicted RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 DNAJC1Q96KC8 554 aaKnown RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 RANBP9Q96S59 729 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CYP2S1Q96SQ9 504 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 RIT2Q99578 217 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 DHRS9Q9BPW9 319 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 RPF2Q9H7B2 306 aaKnown RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 COPS7BQ9H9Q2 264 aaPredicted RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 FBXO8Q9NRD0 319 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 SMPD3Q9NY59 655 aaPredicted RBP4.62□□□□□ -1.67
USP40-213ENST00000483216 ARMCX1Q9P291 453 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ZNF319Q9P2F9 582 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 RIMS3Q9UJD0 308 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ZNF229Q9UJW7 825 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 ZNF221Q9UK13 617 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 TP53TG3Q9ULZ0 132 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CPQQ9Y646 472 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 HSPE1-MOB4S4R3N1 261 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 PDZK1P1A8MUH7 402 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 HACD1B0YJ81 288 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 ANKRD63C9JTQ0 380 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 BOLA2-SMG1P6H3BVE0 249 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 CCSO14618 274 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 RAD51BO15315 384 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 PSMD3O43242 534 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 SH3BGRLO75368 114 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 CABYRO75952 493 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 MYO1DO94832 1006 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 UGT2B4P06133 528 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 RPS17P08708 135 aaKnown RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 GLULP15104 373 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 HOXB8P17481 243 aaPredicted RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 CCNCP24863 283 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 IFNA8P32881 189 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 COPB2P35606 906 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 SOX6P35712 828 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 NAMPTP43490 491 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 NUMBP49757 651 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 FHITP49789 147 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 ARHGDIAP52565 204 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 IST1P53990 364 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 SRP54P61011 504 aaKnown RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 GTF2BQ00403 316 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 DPYSL3Q14195 570 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 KCNJ8Q15842 424 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 TEX44Q53QW1 395 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 ZNF789Q5FWF6 425 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 PPM1LQ5SGD2 360 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 LYPLAL1Q5VWZ2 237 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 FAM45BPQ6NSW5 357 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 C11orf88Q6PI97 169 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 REG3GQ6UW15 175 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 EPGNQ6UW88 154 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 C1orf186Q6ZWK4 172 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 CYP4V2Q6ZWL3 525 aaPredicted RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 NIPA1Q7RTP0 329 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 PRSS48Q7RTY5 328 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 KRT77Q7Z794 578 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 LINC00523Q86TU6 105 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 SLC51BQ86UW2 128 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 UNC45BQ8IWX7 931 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 PARP8Q8N3A8 854 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 STX19Q8N4C7 294 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 CERS5Q8N5B7 392 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 OR13F1Q8NGS4 319 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 OR2T34Q8NGX1 318 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 OR2T3Q8NH03 318 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 FAM45AQ8TCE6 357 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 URGCPQ8TCY9 931 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 GPR148Q8TDV2 347 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms