RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-215	ENST00000477547	PRSS23	O95084	383 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	LYPD3	O95274	346 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	OPN1LW	P04000	364 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	THY1	P04216	161 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	RHCE	P18577	417 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	MAGEA2	P43356	314 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	UQCRFS1	P47985	274 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	SPIB	Q01892	262 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	SRY	Q05066	204 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	WDR88	Q6ZMY6	472 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	ATCAY	Q86WG3	371 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	PM20D2	Q8IYS1	436 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	OR5M9	Q8NGP3	310 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	FAM57A	Q8TBR7	257 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	SLC38A4	Q969I6	547 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	DDIT4L	Q96D03	193 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	PIP5K1A	Q99755	562 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	FNDC11	Q9BVV2	318 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	PRDM14	Q9GZV8	571 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	PNPLA3	Q9NST1	481 aa		13.79	□□□□□ -0.2
SEC13-215	ENST00000477547	MED12L	Q86YW9	2145 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547		A0A087WUJ7	227 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	ZC3H12D	A2A288	527 aa	Known RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547		H0YC42	278 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	TNFSF11	O14788	317 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	FFAR1	O14842	300 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	ZNF208	O43345	1280 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	RRP9	O43818	475 aa	Known RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	FKBP6	O75344	327 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	AGFG2	O95081	481 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	RNF224	P0DH78	156 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	THRB	P10828	461 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	HOXB6	P17509	224 aa	Known RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	TPD52	P55327	224 aa	Predicted RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	ACTR3	P61158	418 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	ST3GAL3	Q11203	375 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	FOXD4	Q12950	439 aa	Predicted RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	MRPL49	Q13405	166 aa	Known RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	TRAM2	Q15035	370 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	BCL2A1	Q16548	175 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	CTU2	Q2VPK5	515 aa	Known RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	IQCC	Q4KMZ1	466 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	FGD3	Q5JSP0	725 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	ESPNL	Q6ZVH7	1005 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	DNAJA3	Q96EY1	480 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	WDYHV1	Q96HA8	205 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	MPP4	Q96JB8	637 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	OR5B2	Q96R09	309 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	COQ10B	Q9H8M1	238 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	TESMIN	Q9Y4I5	508 aa		13.78	□□□□□ -0.2
SEC13-215	ENST00000477547	ANKRD17	O75179	2603 aa	Known RBP	13.77	□□□□□ -0.2
SEC13-215	ENST00000477547	IGKV1D-42	A0A075B6H8	117 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547		A0A1W2PNR3	127 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547		A1L4Q6	167 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	FIGNL2	A6NMB9	653 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547		A8MVM7	634 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	KPNA4	O00629	521 aa	Predicted RBP	13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	PRRG2	O14669	202 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	AHSA1	O95433	338 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	H1F0	P07305	194 aa	Known RBP	13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	CPN1	P15169	458 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	EIF1AX	P47813	144 aa	Known RBP	13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	MAP2K6	P52564	334 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	SUCLG1	P53597	346 aa	Known RBP	13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	PIWIL3	Q7Z3Z3	882 aa	Known RBP	13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	NKAIN4	Q8IVV8	208 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	GALNT11	Q8NCW6	608 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	PIK3C3	Q8NEB9	887 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	OR2V1	Q8NHB1	315 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	ZNF347	Q96SE7	839 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	PRSS27	Q9BQR3	290 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	DENND2D	Q9H6A0	471 aa	Predicted RBP	13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	MAN2C1	Q9NTJ4	1040 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	SH3BGRL2	Q9UJC5	107 aa		13.77	□□□□□ -0.21
SEC13-215	ENST00000477547	POLE	Q07864	2286 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547		A0A0J9YW62	118 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	ADAMDEC1	O15204	470 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	WDR1	O75083	606 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	FUT4	P22083	530 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	FKBP2	P26885	142 aa	Known RBP	13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	RRM2	P31350	389 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	IDUA	P35475	653 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	RBM34	P42696	430 aa	Known RBP	13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	RPS3A	P61247	264 aa	Known RBP	13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	MYBPH	Q13203	477 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	PDSS1	Q5T2R2	415 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	C1orf140	Q5VVS0	124 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	HBM	Q6B0K9	141 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	ZNF787	Q6DD87	383 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	PPP4R4	Q6NUP7	873 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	ZNF585A	Q6P3V2	769 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	TTC33	Q6PID6	262 aa	Predicted RBP	13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	C5orf46	Q6UWT4	87 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	CHMP1B	Q7LBR1	199 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	P3H2	Q8IVL5	708 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	OR10D3	Q8NH80	312 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	STK35	Q8TDR2	534 aa		13.76	□□□□□ -0.21
SEC13-215	ENST00000477547	TMEM255B	Q8WV15	326 aa		13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 29 ms