RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SP7Q8TDD2 431 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 FAM3CQ92520 227 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 UPRTQ96BW1 309 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SLC38A3Q99624 504 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SLC17A9Q9BYT1 436 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 OR2B2Q9GZK3 357 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 ATG5Q9H1Y0 275 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SPATA6Q9NWH7 488 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 PHF11Q9UIL8 331 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 FBXO9Q9UK97 447 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 RPH3AQ9Y2J0 694 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 PLXNA4Q9HCM2 1894 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 EDDM13A0A1B0GTR0 161 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 HMX3A6NHT5 357 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 KDM4EB2RXH2 506 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 H0YIV9 168 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 H3BUI4 141 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GOSR2O14653 212 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 POLR1CO15160 346 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SLCO2B1O94956 709 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 HTR3BO95264 441 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 WISP3O95389 354 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 CFIP05156 583 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SCG5P05408 212 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 CTSBP07858 339 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 INHBBP09529 407 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 H2AFB2P0C5Z0 115 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 POU3F3P20264 500 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GRK6P43250 576 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GDI2P50395 445 aaKnown RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GBX2P52951 348 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 CTXN1P60606 82 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GUCA2AQ02747 115 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 NR0B2Q15466 257 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 MEP1BQ16820 701 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 DEFB133Q30KQ1 61 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 PCGF3Q3KNV8 242 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 CORO6Q6QEF8 472 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 LRRN1Q6UXK5 716 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 THSD4Q6ZMP0 1018 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 ZAR1Q86SH2 424 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 ASPGQ86U10 573 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 CALHM3Q86XJ0 350 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SPERTQ8NA61 448 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GOLM1Q8NBJ4 401 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 OR4Q3Q8NH05 313 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SUN3Q8TAQ9 357 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 TMEM239Q8WW34 195 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 THAP4Q8WY91 577 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 KCNN1Q92952 543 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 Q96M85 177 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 COQ10AQ96MF6 247 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SPATA9Q9BWV2 254 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 EPHX3Q9H6B9 360 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 MOV10Q9HCE1 1003 aaKnown RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 VSX1Q9NZR4 365 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 TLN1Q9Y490 2541 aaKnown RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SLC5A10A0PJK1 596 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 ZNF705EA8MWA4 302 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SHISA8B8ZZ34 492 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 HRKO00198 91 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 EMC8O43402 210 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 RNF13O43567 381 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 NXPH3O95157 252 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 FARS2O95363 451 aaKnown RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 ECDO95905 644 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 TFP02787 698 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 CELA2BP08218 269 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 F3P13726 295 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 LCN1P31025 176 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 KCNJ5P48544 419 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 BTG2P78543 158 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 IFITM2Q01629 132 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 TLE1Q04724 770 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 EIF2B1Q14232 305 aaKnown RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GPR176Q14439 515 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 OR1Q1Q15612 314 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 ZNF79Q15937 498 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 MAPK14Q16539 360 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 HNRNPA1L2Q32P51 320 aaKnown RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 EXOSC6Q5RKV6 272 aaKnown RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 XKRXQ6PP77 449 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 GDF7Q7Z4P5 450 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 IQCF2Q8IXL9 164 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 UBQLNLQ8IYU4 475 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 DUSP19Q8WTR2 217 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 MAFIPQ8WZ33 124 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 HSD17B8Q92506 261 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 WNT2BQ93097 391 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SLC35A4Q96G79 324 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 MS4A8Q9BY19 250 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 SMIM3Q9BZL3 60 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 UBQLN3Q9H347 655 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 TMEM231Q9H6L2 316 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 ALKBH4Q9NXW9 302 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 CGGBP1Q9UFW8 167 aaPredicted RBP4.62□□□□□ -1.67
CCDC39-204ENST00000476379 LAMP5Q9UJQ1 280 aa4.62□□□□□ -1.67
CCDC39-204ENST00000476379 WNK2Q9Y3S1 2297 aa4.61□□□□□ -1.67
CCDC39-204ENST00000476379 TMEM265A0A087WTH1 108 aa4.61□□□□□ -1.67
CCDC39-204ENST00000476379 KCNE1BA0A087WTH5 132 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms