RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 OR1D4P47884 311 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 SRP9P49458 86 aaKnown RBP17.52■□□□□ 0.39
VIM-203ENST00000469543 CCR4P51679 360 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 ERVK-25P63136 954 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 CD226Q15762 336 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 DEFB133Q30KQ1 61 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 ACSM3Q53FZ2 586 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 ULK3Q6PHR2 472 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 SCAIQ8N9R8 606 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 OR4M1Q8NGD0 313 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 LMX1AQ8TE12 382 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 ENAMQ9NRM1 1142 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 SOHLH2Q9NX45 425 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 CHRNA9Q9UGM1 479 aa17.52■□□□□ 0.39
VIM-203ENST00000469543 FAM221BA6H8Z2 402 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 C10orf142B7Z368 130 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 BLOC1S5-TXNDC5H3BN57 136 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 PLPP2O43688 288 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 SELENOFO60613 162 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 COQ9O75208 318 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 AK1P00568 194 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 MYF5P13349 255 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 ALAS2P22557 587 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 TATDN3Q17R31 274 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 ZNF57Q68EA5 555 aaPredicted RBP17.51■□□□□ 0.39
VIM-203ENST00000469543 APOOLQ6UXV4 268 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 LINC00114Q6XXX2 140 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 PRR22Q8IZ63 422 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 LSMEM1Q8N8F7 131 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 GALNT6Q8NCL4 622 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 OR51Q1Q8NH59 317 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 HOXB13Q92826 284 aaPredicted RBP17.51■□□□□ 0.39
VIM-203ENST00000469543 TMEM43Q9BTV4 400 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 EML5Q05BV3 1969 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 OR6C68A6NDL8 312 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 WISP1O95388 367 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 AGFG1P52594 562 aaKnown RBP17.51■□□□□ 0.39
VIM-203ENST00000469543 FGFBP1Q14512 234 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 ZFP69Q49AA0 526 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 OR5H6Q8NGV6 325 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 OR6K6Q8NGW6 343 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 ABHD1Q96SE0 405 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 NRSN2Q9GZP1 204 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 KCNN2Q9H2S1 579 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 RPS6KB2Q9UBS0 482 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 COPS3Q9UNS2 423 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 TMEM5Q9Y2B1 443 aa17.51■□□□□ 0.39
VIM-203ENST00000469543 CELSR3Q9NYQ7 3312 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 LYRM1O43325 122 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 SOX30O94993 753 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 MAP2K3P46734 347 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 SFXN4Q6P4A7 337 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 MED25Q71SY5 747 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 MOSPD2Q8NHP6 518 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 RTN4RQ9BZR6 473 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 TRIM2Q9C040 744 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 Q9N2J8 555 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 A0A1B0GVT2 93 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 NPIPB9F8W1W9 429 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 IDH3BO43837 385 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 IGFBP4P22692 258 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 PLET1Q6UQ28 207 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 PRSS58Q8IYP2 241 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 ZSCAN1Q8NBB4 408 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 PELI1Q96FA3 418 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 SLC38A3Q99624 504 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 COQ7Q99807 217 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 ACOXLQ9NUZ1 547 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 MRPS7Q9Y2R9 242 aaKnown RBP17.5■□□□□ 0.39
VIM-203ENST00000469543 PCNX3Q9H6A9 2034 aa17.5■□□□□ 0.39
VIM-203ENST00000469543 FAM240BA0A1B0GVZ2 78 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 H3BSH0 61 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 SLC6A6P31641 620 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 ATP12AP54707 1039 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 GRAMD2AQ8IUY3 354 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 TMEM151BQ8IW70 566 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 SLC7A6Q92536 515 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 HDHD2Q9H0R4 259 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 PNO1Q9NRX1 252 aaKnown RBP17.49■□□□□ 0.39
VIM-203ENST00000469543 PAQR5Q9NXK6 330 aaPredicted RBP17.49■□□□□ 0.39
VIM-203ENST00000469543 A0A0G2JK05 382 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 SMLR1H3BR10 107 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 MTNR1BP49286 362 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 RPL13AP3Q6NVV1 102 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 POMZP3Q6PJE2 187 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 GPR135Q8IZ08 494 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 MOGAT1Q96PD6 335 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 ZNF576Q9H609 170 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 C14orf105Q9NVL8 296 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 RBFOX1Q9NWB1 397 aaKnown RBP17.49■□□□□ 0.39
VIM-203ENST00000469543 DHCR7Q9UBM7 475 aaKnown RBP17.49■□□□□ 0.39
VIM-203ENST00000469543 GNG8Q9UK08 70 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 TRIOBPQ9H2D6 2365 aa17.49■□□□□ 0.39
VIM-203ENST00000469543 ANKRD61A6NGH8 418 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 SERINC4A6NH21 518 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 PRR32B1ATL7 298 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 CLDN4O14493 209 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 PROS1P07225 676 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 FAM157BP0CG42 384 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 RPS27P42677 84 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms