RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ZNF566Q969W8 418 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 MEPEQ9NQ76 525 aaPredicted RBP13.8□□□□□ -0.2
COL17A1-201ENST00000353479 MEGF11A6BM72 1044 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 CHRM4P08173 479 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 RAB15P59190 212 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 NFATC3Q12968 1075 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 C19orf53Q9UNZ5 99 aaPredicted RBP13.8□□□□□ -0.2
COL17A1-201ENST00000353479 LOC102725191A0A1B0GVB3 256 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 CRTAPO75718 401 aaPredicted RBP13.8□□□□□ -0.2
COL17A1-201ENST00000353479 ELAVL4P26378 380 aaKnown RBP13.8□□□□□ -0.2
COL17A1-201ENST00000353479 POLR2IP36954 125 aaKnown RBP13.8□□□□□ -0.2
COL17A1-201ENST00000353479 STT3AP46977 705 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 SLC35A1P78382 337 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 AAED1Q7RTV5 226 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 TMEM178AQ8NBL3 297 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 NDNFQ8TB73 568 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 TSLPQ969D9 159 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 PIGQQ9BRB3 760 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 OR51E2Q9H255 320 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 POLE3Q9NRF9 147 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 MRPS14O60783 128 aaKnown RBP13.8□□□□□ -0.2
COL17A1-201ENST00000353479 SCGNO76038 276 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 ETHE1O95571 254 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 SBK3P0C264 359 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 RAB3AP20336 220 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 GALNT11Q8NCW6 608 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 AKAP1Q92667 903 aaKnown RBP eCLIP13.8□□□□□ -0.2
COL17A1-201ENST00000353479 GGHQ92820 318 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 SLC41A2Q96JW4 573 aa13.8□□□□□ -0.2
COL17A1-201ENST00000353479 ACP2P11117 423 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 SAXO2Q658L1 398 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CNOT9Q92600 299 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ACTR6Q9GZN1 396 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ENY2Q9NPA8 101 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 SIDT1Q9NXL6 827 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 SPEF1Q9Y4P9 236 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 WIF1Q9Y5W5 379 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 TRAV18A0A075B6X5 111 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 TMEM269A0A1B0GVZ9 245 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 FAM230AA0A1W2PPH8 454 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ACSM3Q53FZ2 586 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 PTRH1Q86Y79 214 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 OR51T1Q8NGJ9 327 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 HAVCR2Q8TDQ0 301 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 NXF5Q9H1B4 397 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CNOT2Q9NZN8 540 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 SLC22A7Q9Y694 548 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 TSPAN11A1L157 253 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 KLRC4-KLRK1H3BQV0 150 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 BSGP35613 385 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CARD18P57730 90 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF91Q05481 1191 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 UGT2A3Q6UWM9 527 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 C5orf46Q6UWT4 87 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 B3GLCTQ6Y288 498 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 LILRA2Q8N149 483 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 OR7G2Q8NG99 324 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF417Q8TAU3 575 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 POTEKPQ9BYX7 375 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ELOVL3Q9HB03 270 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CCDC59Q9P031 241 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 KCNIP3Q9Y2W7 256 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 A0A1W2PQL4 384 aaPredicted RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 TTLL8A6PVC2 850 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ANKRD30BLA7E2S9 258 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ACOT8O14734 319 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 GSTT2P0CG29 244 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CCL7P80098 99 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CENPSQ8N2Z9 138 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ABCG5Q9H222 651 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 NOSIPQ9Y314 301 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 NPFFR2Q9Y5X5 522 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 MPIG6BO95866 241 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CAPNS1P04632 268 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 TFPTP0C1Z6 253 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 MAP2K3P46734 347 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 EIF5AP63241 154 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 SLC16A14Q7RTX9 510 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 ABHD11Q8NFV4 315 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 MFSD8Q8NHS3 518 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 SLC35A4Q96G79 324 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 SYNPO2LQ9H987 977 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CALHM2Q9HA72 323 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 DUSP22Q9NRW4 184 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 CD300AQ9UGN4 299 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 MRPS2Q9Y399 296 aaKnown RBP13.79□□□□□ -0.2
COL17A1-201ENST00000353479 PPIL1Q9Y3C6 166 aa13.79□□□□□ -0.2
COL17A1-201ENST00000353479 H0YIG0 161 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 DSCR3O14972 297 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 IL32P24001 234 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 MAB21L1Q13394 359 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 SNTB2Q13425 540 aaKnown RBP13.78□□□□□ -0.2
COL17A1-201ENST00000353479 CMPK2Q5EBM0 449 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 TMEM71Q6P5X7 295 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 CADM4Q8NFZ8 388 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 HCAR1Q9BXC0 346 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 DNTTIP1Q9H147 329 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 POMT2Q9UKY4 750 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 A0A1B0GTL3 188 aa13.78□□□□□ -0.2
COL17A1-201ENST00000353479 ARGFXA6NJG6 315 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms