RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PRICKLE3O43900 615 aaPredicted RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 F11P03951 625 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ARAFP10398 606 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 PRKAR1BP31321 381 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 RABIFP47224 123 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 MCCD1P59942 119 aaPredicted RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 HHEXQ03014 270 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ARHGAP19Q14CB8 494 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 PIP5KL1Q5T9C9 394 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 CD163Q86VB7 1156 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 SDR9C7Q8NEX9 313 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 TM9SF4Q92544 642 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 SHPKQ9UHJ6 478 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ZNF175Q9Y473 711 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 PUS1Q9Y606 427 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS39-201ENST00000318006 HEXBP07686 556 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 TSPAN31Q12999 210 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 NFATC4Q14934 902 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SGCAQ16586 387 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 DCST2Q5T1A1 773 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 TANGO2Q6ICL3 276 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 MAMDC2Q7Z304 686 aaPredicted RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 SLC22A12Q96S37 553 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 APOOQ9BUR5 198 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 C20orf85Q9H1P6 137 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 PTGES2Q9H7Z7 377 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 UBR3Q6ZT12 1888 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 TRBV4-1A0A0J9YWV2 114 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 ANTXRLA6NF34 631 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 OR52A4PA6NMU1 304 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 FAM171A2A8MVW0 826 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 PPP1R2P9O14990 202 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 IFNGR1P15260 489 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 PGCP20142 388 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 POU3F4P49335 361 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 PRLHRP49683 370 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 TMUB2Q71RG4 321 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 ST8SIA2Q92186 375 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 DAZLQ92904 295 aaKnown RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 MS4A4EQ96PG1 132 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 WDR77Q9BQA1 342 aaPredicted RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 SAMD10Q9BYL1 202 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 PITHD1Q9GZP4 211 aaPredicted RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 KIF25Q9UIL4 384 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SLC9B1P1A6NJY1 282 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 DUX1O43812 170 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 CCR6P51684 374 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SHC2P98077 582 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 CDK3Q00526 305 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 H3F3CQ6NXT2 135 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 ZC3H14Q6PJT7 736 aaKnown RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 RTN4RL1Q86UN2 441 aaPredicted RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 ZNF695Q8IW36 515 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 ADGRF3Q8IZF5 1079 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 RNF128Q8TEB7 428 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 DOK4Q8TEW6 326 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 ZNF480Q8WV37 535 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SLC25A46Q96AG3 418 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 DCLRE1CQ96SD1 692 aaKnown RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 ZFYVE21Q9BQ24 234 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 AMBRA1Q9C0C7 1298 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SNX11Q9Y5W9 270 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 GON4LQ3T8J9 2241 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 PHIPQ8WWQ0 1821 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 TRABD2BA6NFA1 517 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SCGB1D1O95968 90 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 S100A8P05109 93 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 C1SP09871 688 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SHC1P29353 583 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 CCR9P51686 369 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 PDZK1IP1Q13113 114 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 SLC35F3Q8IY50 421 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 ZNF582Q96NG8 517 aaPredicted RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 DDOQ99489 341 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 C12orf57Q99622 126 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 ALOXE3Q9BYJ1 711 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 C2orf42Q9NWW7 574 aa10.74□□□□□ -0.69
VPS39-201ENST00000318006 DNMT3BQ9UBC3 853 aaKnown RBP10.74□□□□□ -0.69
VPS39-201ENST00000318006 DVL2O14641 736 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 DRD1P21728 446 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 HCCSP53701 268 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 TOR2AQ5JU69 321 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 RNF111Q6ZNA4 994 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 OR51T1Q8NGJ9 327 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 OR2A12Q8NGT7 310 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 LGALS14Q8TCE9 139 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 BPIFA2Q96DR5 249 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 DUSP21Q9H596 190 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 PCYT1BQ9Y5K3 369 aaPredicted RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 SDK1Q7Z5N4 2213 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 DPM1O60762 260 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 CRTAPO75718 401 aaPredicted RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 HOXD11P31277 338 aaPredicted RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 NDUFA6P56556 154 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 HNRNPKP61978 463 aaKnown RBP eCLIP10.73□□□□□ -0.69
VPS39-201ENST00000318006 PLA2G7Q13093 441 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 SLC5A12Q1EHB4 618 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 CTU2Q2VPK5 515 aaKnown RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 OR10K2Q6IF99 312 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ZNF852Q6ZMS4 543 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms