RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ELSPBP1Q96BH3 223 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 ANKRD9Q96BM1 317 aaPredicted RBP17.22■□□□□ 0.35
CPSF3-201ENST00000238112 BMFQ96LC9 184 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 CCDC3Q9BQI4 270 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 EVA1BQ9NVM1 165 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 CHRNA9Q9UGM1 479 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 GNG8Q9UK08 70 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 MGAT4AQ9UM21 535 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 IER3IP1Q9Y5U9 82 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 TRBV2A0A0J9YWF9 115 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 A0A1W2PQF6 199 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 NDUFB5O43674 189 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 HYAL3O43820 417 aaPredicted RBP17.22■□□□□ 0.35
CPSF3-201ENST00000238112 GATBO75879 557 aaKnown RBP17.22■□□□□ 0.35
CPSF3-201ENST00000238112 SLC35E2P0CK97 266 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 SRP54P61011 504 aaKnown RBP17.22■□□□□ 0.35
CPSF3-201ENST00000238112 LGALS3BPQ08380 585 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 CAMK2BQ13554 666 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 TIGD4Q8IY51 512 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 LSMEM1Q8N8F7 131 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 OR8H1Q8NGG4 311 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 MKKSQ9NPJ1 570 aaPredicted RBP17.22■□□□□ 0.35
CPSF3-201ENST00000238112 STARD5Q9NSY2 213 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 SCML1Q9UN30 329 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 CAMK2AQ9UQM7 478 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 AK6Q9Y3D8 172 aaKnown RBP17.22■□□□□ 0.35
CPSF3-201ENST00000238112 ENTPD2Q9Y5L3 495 aa17.22■□□□□ 0.35
CPSF3-201ENST00000238112 NOS1APO75052 506 aaPredicted RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 KLF8O95600 359 aaPredicted RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 UCHL1P09936 223 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 EDNRAP25101 427 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 VSX2P58304 361 aaPredicted RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 PSG6Q00889 435 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 PON3Q15166 354 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 CDONQ4KMG0 1287 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 RPL22L1Q6P5R6 122 aaKnown RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 ULK3Q6PHR2 472 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 DGAT2L6Q6ZPD8 337 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 ESPNLQ6ZVH7 1005 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 RNF44Q7L0R7 432 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 ADAMTS14Q8WXS8 1223 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 DACT3Q96B18 629 aaPredicted RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 OR14A2Q96R54 314 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 C7orf50Q9BRJ6 194 aaKnown RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 DIABLOQ9NR28 239 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 SPATA2Q9UM82 520 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 A0A0J9YY10 115 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 RPL4P36578 427 aaKnown RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 CCR6P51684 374 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 RAB38P57729 211 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 GGTLC2Q14390 218 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 HSD17B12Q53GQ0 312 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 CEP78Q5JTW2 689 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 OVCH1Q7RTY7 1134 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 ZNF550Q7Z398 422 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 OR4N2Q8NGD1 307 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 HAVCR2Q8TDQ0 301 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 PATE1Q8WXA2 126 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 SGTBQ96EQ0 304 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 MRPL48Q96GC5 212 aaKnown RBP17.21■□□□□ 0.35
CPSF3-201ENST00000238112 ZCCHC4Q9H5U6 513 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 NRIP3Q9NQ35 241 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 HRASLS2Q9NWW9 162 aa17.21■□□□□ 0.35
CPSF3-201ENST00000238112 MCIDASD6RGH6 385 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 TNFRSF10CO14798 259 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 RDH16O75452 317 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 HNRNPA2B1P22626 353 aaKnown RBP17.2■□□□□ 0.34
CPSF3-201ENST00000238112 OR3A3P47888 321 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 ILF3Q12906 894 aaKnown RBP eCLIP17.2■□□□□ 0.34
CPSF3-201ENST00000238112 ALG11Q2TAA5 492 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 SLC22A10Q63ZE4 541 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 HOXB13Q92826 284 aaPredicted RBP17.2■□□□□ 0.34
CPSF3-201ENST00000238112 LMF2Q9BU23 707 aaKnown RBP17.2■□□□□ 0.34
CPSF3-201ENST00000238112 LMAN2LQ9H0V9 348 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 ZFP64Q9NPA5 681 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 ZNF879B4DU55 563 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 IGKV1D-16P01601 117 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 MT-ND4P03905 459 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 H2AFB2P0C5Z0 115 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 P2RX3P56373 397 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 SNTB2Q13425 540 aaKnown RBP17.2■□□□□ 0.34
CPSF3-201ENST00000238112 UBE2NLQ5JXB2 153 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 FAM109BQ6ICB4 259 aaPredicted RBP17.2■□□□□ 0.34
CPSF3-201ENST00000238112 KIRREL2Q6UWL6 708 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 SLITRK4Q8IW52 837 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 OR14A16Q8NHC5 309 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 LGALS14Q8TCE9 139 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 PDCD1LG2Q9BQ51 273 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 MFRPQ9BY79 579 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 UCKL1Q9NWZ5 548 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 SLCO1C1Q9NYB5 712 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 PTTG3PQ9NZH4 202 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 ICAM5Q9UMF0 924 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 ADAM18Q9Y3Q7 739 aa17.2■□□□□ 0.34
CPSF3-201ENST00000238112 TRABD2BA6NFA1 517 aa17.19■□□□□ 0.34
CPSF3-201ENST00000238112 GPR143P51810 404 aa17.19■□□□□ 0.34
CPSF3-201ENST00000238112 RPS11P62280 158 aaKnown RBP eCLIP17.19■□□□□ 0.34
CPSF3-201ENST00000238112 ZBTB37Q5TC79 503 aa17.19■□□□□ 0.34
CPSF3-201ENST00000238112 LINC00114Q6XXX2 140 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms