RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SLC22A12Q96S37 553 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 HBEGFQ99075 208 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 COPS8Q99627 209 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR11A1Q9GZK7 315 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ADAM29Q9UKF5 820 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3DA0A087WVF3 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3IA0A087WXS9 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3EA0A087X179 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3BA6NDS4 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3FA6NER0 549 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 C5orf52A6NGY3 159 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3LB9A6J9 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 XRCC3O43542 346 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3HP0C7X1 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MMP9P14780 707 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 AIMP2Q13155 320 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TUSC3Q13454 348 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 EOGTQ5NDL2 527 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SH3PXD2AQ5TCZ1 1133 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MBNL2Q5VZF2 373 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3GQ6DHY5 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3CQ6IPX1 549 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 FAM199XQ6PEV8 388 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CDHR3Q6ZTQ4 885 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SSX8Q7RTT4 187 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CBLN2Q8IUK8 224 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TBC1D3Q8IZP1 549 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 VWA5B2Q8N398 1253 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 C17orf47Q8NEP4 570 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RAB8BQ92930 207 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR52E6Q96RD3 313 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CDCA4Q9BXL8 241 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MMP28Q9H239 520 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PTGES2Q9H7Z7 377 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DAPP1Q9UN19 280 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CLDN16Q9Y5I7 305 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PTPRGP23470 1445 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 AFDNP55196 1824 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ANKRD66B4E2M5 251 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CXCL11O14625 94 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 WNT9AO14904 365 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 BMP8BP34820 402 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RAB10P61026 200 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 WSCD1Q658N2 575 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 HFE2Q6ZVN8 426 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 BMP8AQ7Z5Y6 402 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ADGRA1Q86SQ6 560 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NLRX1Q86UT6 975 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF738Q8NE65 137 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RAB40CQ96S21 281 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SLC29A3Q9BZD2 475 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 XYLT2Q9H1B5 865 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SEMA4GQ9NTN9 838 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OLAHQ9NV23 265 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SIDT1Q9NXL6 827 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ALDOBP05062 364 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 HTR2CP28335 458 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 LINC00696Q6ZRV3 163 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 LRRC28Q86X40 367 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NAT16Q8N8M0 369 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MRGPRFQ96AM1 343 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RPUSD4Q96CM3 377 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RBM15Q96T37 977 aaKnown RBP eCLIP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DDOQ99489 341 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ELOVL3Q9HB03 270 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PLEKHJ1Q9NW61 149 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NME7Q9Y5B8 376 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NFS1Q9Y697 457 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PNPLA7Q6ZV29 1317 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CCL15-CCL14A0A0B4J2E2 113 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 K7EQS6 105 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 P04436 131 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NR2F1P10589 423 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PRKCDQ05655 676 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NR0B2Q15466 257 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 C3orf36Q3SXR2 165 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SYT12Q8IV01 421 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 INO80EQ8NBZ0 244 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 HHIPL1Q96JK4 782 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SNX22Q96L94 193 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR6C1Q96RD1 312 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 AMNQ9BXJ7 453 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NKTRP30414 1462 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SH2D7A6NKC9 451 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CGB1A6NKQ9 187 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SHISA7A6NL88 538 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DLEU1O43261 78 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SOX14O95416 240 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ETHE1O95571 254 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 IGF2P01344 180 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PCSK6P29122 969 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RHBDD2Q6NTF9 364 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RAD9BQ6WBX8 426 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF841Q6ZN19 808 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DEFB107AQ8IZN7 70 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CNOT9Q92600 299 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 F2RL3Q96RI0 385 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SLC7A7Q9UM01 511 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SNX10Q9Y5X0 201 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TEX264Q9Y6I9 313 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms