RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OSGIN1Q9UJX0 560 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 TMED7Q9Y3B3 224 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 GZMMP51124 257 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 CSNK2A1P68400 391 aaPredicted RBP18.55■□□□□ 0.56
CLN3-240ENST00000631023 VMACQ2NL98 169 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 FBXL19-AS1Q494R0 122 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 TREML1Q86YW5 311 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 MCEMP1Q8IX19 187 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 COQ10BQ9H8M1 238 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 EVA1AQ9H8M9 152 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 NPDC1Q9NQX5 325 aaPredicted RBP18.55■□□□□ 0.56
CLN3-240ENST00000631023 PACSIN3Q9UKS6 424 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 UNC79Q9P2D8 2635 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 A0A1W2PNR3 127 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 M0QX08 132 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 ZNF208O43345 1280 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 TNFSF13O75888 250 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 MFN2O95140 757 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 CXCR1P25024 350 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 PEX19P40855 299 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 ZNF239Q16600 458 aaKnown RBP18.54■□□□□ 0.56
CLN3-240ENST00000631023 ERICH5Q6P6B1 374 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 MEX3BQ6ZN04 569 aaKnown RBP18.54■□□□□ 0.56
CLN3-240ENST00000631023 TMPPEQ6ZT21 453 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 CALHM3Q86XJ0 350 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 RNASE6Q93091 150 aaKnown RBP18.54■□□□□ 0.56
CLN3-240ENST00000631023 MARVELD3Q96A59 401 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 DDIT4LQ96D03 193 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 GMPPAQ96IJ6 420 aaPredicted RBP18.54■□□□□ 0.56
CLN3-240ENST00000631023 HOPXQ9BPY8 73 aaPredicted RBP18.54■□□□□ 0.56
CLN3-240ENST00000631023 SLC24A3Q9HC58 644 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 JKAMPQ9P055 326 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 EMC9Q9Y3B6 208 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 HDGFL3Q9Y3E1 203 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 FREM1Q5H8C1 2179 aa18.54■□□□□ 0.56
CLN3-240ENST00000631023 SULT2B1O00204 365 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 PRG2P13727 222 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 CCNA2P20248 432 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 PRDX6P30041 224 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 UQCRC1P31930 480 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 KIR2DL2P43627 348 aaPredicted RBP18.53■□□□□ 0.56
CLN3-240ENST00000631023 CTBP2P56545 445 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 RNPS1Q15287 305 aaKnown RBP18.53■□□□□ 0.56
CLN3-240ENST00000631023 FAM214BQ7L5A3 538 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 SLC43A2Q8N370 569 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 SLC26A7Q8TE54 656 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 ROBO4Q8WZ75 1007 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 SRXN1Q9BYN0 137 aa18.53■□□□□ 0.56
CLN3-240ENST00000631023 MSTNO14793 375 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 TPST1O60507 370 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 DCTN3O75935 186 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 ENPP1P22413 925 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 CPA2P48052 419 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 DIO1P49895 249 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 SIRPAP78324 504 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 DMTNQ08495 405 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 HACD2Q6Y1H2 254 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 FCRLAQ7L513 359 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 KIF18BQ86Y91 864 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 ACBD4Q8NC06 268 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 RASSF5Q8WWW0 418 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 STARD4Q96DR4 205 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 ZHX1-C8orf76Q96EF9 292 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 ZNF583Q96ND8 569 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 LRRC37BQ96QE4 947 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 CCT8L2Q96SF2 557 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 FAM53CQ9NYF3 392 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 RPS6KB2Q9UBS0 482 aa18.52■□□□□ 0.56
CLN3-240ENST00000631023 ANKHD1Q8IWZ3 2542 aaKnown RBP18.52■□□□□ 0.56
CLN3-240ENST00000631023 FRS3O43559 492 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 SMNDC1O75940 238 aaKnown RBP eCLIP18.51■□□□□ 0.55
CLN3-240ENST00000631023 PRKD3O94806 890 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 PMS2P2O95744 297 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 C8BP07358 591 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 IGFBP2P18065 325 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 RGS8P57771 180 aaPredicted RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 NCALDP61601 193 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 MYBPHQ13203 477 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 VEZF1Q14119 521 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 LUZP2Q86TE4 346 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 DMRTC2Q8IXT2 367 aaPredicted RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 SMYD1Q8NB12 490 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 RNF128Q8TEB7 428 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 ZNF559Q9BR84 538 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 TRIM2Q9C040 744 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 TRAPPC4Q9Y296 219 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 NBPF19A0A087WUL8 3843 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 TMEM72A0PK05 275 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 A8MXE2 369 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 NDUFAB1O14561 156 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 DNPH1O43598 174 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 SS18L1O75177 396 aaPredicted RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 GCM2O75603 506 aaPredicted RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 NUDT2P50583 147 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 GUSBP1Q15486 140 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 VWA1Q6PCB0 445 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 CCDC80Q76M96 950 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 BTLAQ7Z6A9 289 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 LSMEM1Q8N8F7 131 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 ANKS4BQ8N8V4 417 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms