RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SSTR2P30874 369 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 KCNJ5P48544 419 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 DLX5P56178 289 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 DUSP7Q16829 419 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 OR52E4Q8NGH9 312 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 VANGL1Q8TAA9 524 aaPredicted RBP16.25■□□□□ 0.19
CLN3-239ENST00000628023 CA5BP1Q8WTZ4 195 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 FAM162AQ96A26 154 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 SDCCAG3Q96C92 435 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 ZNF845Q96IR2 970 aaPredicted RBP16.25■□□□□ 0.19
CLN3-239ENST00000628023 PRRG4Q9BZD6 226 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 TIGARQ9NQ88 270 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 PAQR5Q9NXK6 330 aaPredicted RBP16.25■□□□□ 0.19
CLN3-239ENST00000628023 CLCF1Q9UBD9 225 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 TESQ9UGI8 421 aaKnown RBP16.25■□□□□ 0.19
CLN3-239ENST00000628023 PACSIN3Q9UKS6 424 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 BAG5Q9UL15 447 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 MCTS1Q9ULC4 181 aaKnown RBP16.25■□□□□ 0.19
CLN3-239ENST00000628023 TMED7Q9Y3B3 224 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 A0A0J9YW62 118 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 M0R3H8 397 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 ADAMDEC1O15204 470 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 EFNA2O43921 213 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 CXCL13O43927 109 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 LGI1O95970 557 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 IL2RAP01589 272 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 FESP07332 822 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 CD247P20963 164 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 CXCR1P25024 350 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 KDELR2P33947 212 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 PON3Q15166 354 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 CYBRD1Q53TN4 286 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 SYT14P1Q58G82 188 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 SAMD4BQ5PRF9 694 aaKnown RBP16.24■□□□□ 0.19
CLN3-239ENST00000628023 RIPPLY2Q5TAB7 128 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 PLXDC2Q6UX71 529 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 RBM15BQ8NDT2 890 aaKnown RBP16.24■□□□□ 0.19
CLN3-239ENST00000628023 GPR32P1Q8NGA4 272 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 RNF217Q8TC41 542 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 LZICQ8WZA0 190 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 WNT2BQ93097 391 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 TPD52L3Q96J77 140 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 LURAP1Q96LR2 239 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 OR5B2Q96R09 309 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 CDRT15Q96T59 188 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 TM9SF2Q99805 663 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 ARHGDIGQ99819 225 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 ZNF559Q9BR84 538 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 RSPO3Q9BXY4 272 aaPredicted RBP16.24■□□□□ 0.19
CLN3-239ENST00000628023 TRIM2Q9C040 744 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 SELENONQ9NZV5 590 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 EGFL7Q9UHF1 273 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 OSGIN1Q9UJX0 560 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 PRDM4Q9UKN5 801 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 SLC9A8Q9Y2E8 581 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 ZNF175Q9Y473 711 aa16.24■□□□□ 0.19
CLN3-239ENST00000628023 PHF3Q92576 2039 aaKnown RBP16.24■□□□□ 0.19
CLN3-239ENST00000628023 A0A1W2PNR3 127 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 UBOX5O94941 541 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 FCGR2AP12318 317 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 TCN1P20061 433 aaPredicted RBP16.23■□□□□ 0.19
CLN3-239ENST00000628023 TIMP3P35625 211 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 ZNF136P52737 540 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 CARD18P57730 90 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 NRF1Q16656 503 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 CTU2Q2VPK5 515 aaKnown RBP16.23■□□□□ 0.19
CLN3-239ENST00000628023 SEM1Q6ZVN7 128 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 ADGRG3Q86Y34 549 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 CCDC71Q8IV32 467 aaPredicted RBP16.23■□□□□ 0.19
CLN3-239ENST00000628023 C9orf106Q8NAJ2 232 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 ASB5Q8WWX0 329 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 DDIT4LQ96D03 193 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 ADGRG7Q96K78 797 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 TMEM27Q9HBJ8 222 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 ADPRHL2Q9NX46 363 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 SH3GLB1Q9Y371 365 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 CACNA1CQ13936 2221 aa16.23■□□□□ 0.19
CLN3-239ENST00000628023 A0A0G2JNJ9 132 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 TMEM72A0PK05 275 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 MBD3L4A6NDZ8 208 aaPredicted RBP16.22■□□□□ 0.19
CLN3-239ENST00000628023 MBD3L3A6NE82 208 aaPredicted RBP16.22■□□□□ 0.19
CLN3-239ENST00000628023 MBD3L5A6NJ08 208 aaPredicted RBP16.22■□□□□ 0.19
CLN3-239ENST00000628023 HSPB2A8KAH6 182 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 ZNF682O95780 498 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 NCK1P16333 377 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 GGT1P19440 569 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 FKBP2P26885 142 aaKnown RBP16.22■□□□□ 0.19
CLN3-239ENST00000628023 HTR2AP28223 471 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 CHRNB4P30926 498 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 CRYBA2P53672 197 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 HSPB2Q16082 182 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 RINLQ6ZS11 566 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 ADGRE4PQ86SQ3 457 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 FAM156AQ8NDB6 213 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 MBD3L2Q8NHZ7 208 aaPredicted RBP16.22■□□□□ 0.19
CLN3-239ENST00000628023 FNDC9Q8TBE3 224 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 OSTF1Q92882 214 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 CPNE4Q96A23 557 aaPredicted RBP16.22■□□□□ 0.19
CLN3-239ENST00000628023 C3orf49Q96BT1 292 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 UCN2Q96RP3 112 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms