RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ENKD1Q9H0I2 346 aa13.61□□□□□ -0.23
LIG1-219ENST00000600055 CMTM6Q9NX76 183 aa13.61□□□□□ -0.23
LIG1-219ENST00000600055 JKAMPQ9P055 326 aa13.61□□□□□ -0.23
LIG1-219ENST00000600055 GMPR2Q9P2T1 348 aaKnown RBP13.61□□□□□ -0.23
LIG1-219ENST00000600055 ADAM21Q9UKJ8 722 aa13.61□□□□□ -0.23
LIG1-219ENST00000600055 DOCK7Q96N67 2140 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 CCT8L1PA6NM43 557 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 HNRNPRO43390 633 aaKnown RBP13.6□□□□□ -0.23
LIG1-219ENST00000600055 SERPINB7O75635 380 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 CRHP06850 196 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 FCGR2AP12318 317 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 ENPP1P22413 925 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 UQCRC1P31930 480 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 HTR3AP46098 478 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 RAC3P60763 192 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 VMACQ2NL98 169 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 WBP2NLQ6ICG8 309 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 TMPPEQ6ZT21 453 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 ABHD3Q8WU67 409 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 SLC25A43Q8WUT9 341 aaPredicted RBP13.6□□□□□ -0.23
LIG1-219ENST00000600055 CPNE4Q96A23 557 aaPredicted RBP13.6□□□□□ -0.23
LIG1-219ENST00000600055 GPATCH1Q9BRR8 931 aaKnown RBP13.6□□□□□ -0.23
LIG1-219ENST00000600055 TIGARQ9NQ88 270 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 ARL2BPQ9Y2Y0 163 aa13.6□□□□□ -0.23
LIG1-219ENST00000600055 ZC3H12DA2A288 527 aaKnown RBP13.59□□□□□ -0.23
LIG1-219ENST00000600055 PRORSD1PA6NEY8 169 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 SULT2B1O00204 365 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 SYT5O00445 386 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 SMNDC1O75940 238 aaKnown RBP eCLIP13.59□□□□□ -0.23
LIG1-219ENST00000600055 PLGP00747 810 aaPredicted RBP13.59□□□□□ -0.23
LIG1-219ENST00000600055 PRF1P14222 555 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 HTR2AP28223 471 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 DIO1P49895 249 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 CRYBA2P53672 197 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 COPZ1P61923 177 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 BNIP2Q12982 314 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 MYBPHQ13203 477 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 DUSP7Q16829 419 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 FBXL19-AS1Q494R0 122 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 FCRLAQ7L513 359 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 SLC30A8Q8IWU4 369 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 DMRTC2Q8IXT2 367 aaPredicted RBP13.59□□□□□ -0.23
LIG1-219ENST00000600055 GPR32P1Q8NGA4 272 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 RNF128Q8TEB7 428 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 RNASE6Q93091 150 aaKnown RBP13.59□□□□□ -0.23
LIG1-219ENST00000600055 C3orf49Q96BT1 292 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 TAMM41Q96BW9 452 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 REXO5Q96IC2 774 aaKnown RBP13.59□□□□□ -0.23
LIG1-219ENST00000600055 CCT8L2Q96SF2 557 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 SPOCK3Q9BQ16 436 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 OPN3Q9H1Y3 402 aaPredicted RBP13.59□□□□□ -0.23
LIG1-219ENST00000600055 PIGMQ9H3S5 423 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 EFCAB1Q9HAE3 211 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 PACSIN3Q9UKS6 424 aa13.59□□□□□ -0.23
LIG1-219ENST00000600055 SPIN1Q9Y657 262 aaPredicted RBP13.59□□□□□ -0.23
LIG1-219ENST00000600055 NBPF19A0A087WUL8 3843 aa13.58□□□□□ -0.23
LIG1-219ENST00000600055 CACNA1CQ13936 2221 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 M0R3H8 397 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 TPST2O60704 377 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 SS18L1O75177 396 aaPredicted RBP13.58□□□□□ -0.24
LIG1-219ENST00000600055 CGAP01215 116 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 FESP07332 822 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 CD247P20963 164 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 CXCR1P25024 350 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 CPA2P48052 419 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 NUDT2P50583 147 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 C8orf82Q6P1X6 216 aaPredicted RBP13.58□□□□□ -0.24
LIG1-219ENST00000600055 FAM214BQ7L5A3 538 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 PATL1Q86TB9 770 aaKnown RBP13.58□□□□□ -0.24
LIG1-219ENST00000600055 MCEMP1Q8IX19 187 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 SLC15A3Q8IY34 581 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 ZNF295-AS1Q8N0V1 137 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 SLC35B4Q969S0 331 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 CMTM5Q96DZ9 223 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 GMPPAQ96IJ6 420 aaPredicted RBP13.58□□□□□ -0.24
LIG1-219ENST00000600055 RBM24Q9BX46 236 aaKnown RBP13.58□□□□□ -0.24
LIG1-219ENST00000600055 MED12LQ86YW9 2145 aa13.58□□□□□ -0.24
LIG1-219ENST00000600055 ADGRG4Q8IZF6 3080 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 A8MXE2 369 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 FAM220BPB1ANY3 271 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 MSTNO14793 375 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 SMAD9O15198 467 aaKnown RBP13.57□□□□□ -0.24
LIG1-219ENST00000600055 ZNF208O43345 1280 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 PMS2P2O95744 297 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 LGI1O95970 557 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 IMPDH2P12268 514 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 PRDX6P30041 224 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 KCNJ5P48544 419 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 SLC7A2P52569 658 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 CTBP2P56545 445 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 RGS8P57771 180 aaPredicted RBP13.57□□□□□ -0.24
LIG1-219ENST00000600055 OR2B6P58173 313 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 INTS11Q5TA45 600 aaKnown RBP13.57□□□□□ -0.24
LIG1-219ENST00000600055 EEF1A1P5Q5VTE0 462 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 ZNF474Q6S9Z5 364 aaPredicted RBP13.57□□□□□ -0.24
LIG1-219ENST00000600055 CCDC80Q76M96 950 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 ATG4DQ86TL0 474 aaPredicted RBP13.57□□□□□ -0.24
LIG1-219ENST00000600055 TUSC5Q8IXB3 177 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 ZNF610Q8N9Z0 462 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 OR4D11Q8NGI4 311 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms