RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NPTX1Q15818 432 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 SLC25A35Q3KQZ1 300 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 SYT14P1Q58G82 188 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 TSPYL5Q86VY4 417 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 KRT73Q86Y46 540 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 ARMC8Q8IUR7 673 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 SLC30A8Q8IWU4 369 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 LSMEM1Q8N8F7 131 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 SMYD1Q8NB12 490 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 OSTF1Q92882 214 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 INTS12Q96CB8 462 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 CMTM5Q96DZ9 223 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 ZNF607Q96SK3 696 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 ARHGDIGQ99819 225 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 SPATA5L1Q9BVQ7 753 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 PRR14Q9BWN1 585 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 OR11A1Q9GZK7 315 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 ENKD1Q9H0I2 346 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 EFCAB1Q9HAE3 211 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 PAQR5Q9NXK6 330 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 TMED7Q9Y3B3 224 aa17.45■□□□□ 0.38
SHKBP1-221ENST00000599833 ZC3H12DA2A288 527 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 NPIPB7O75200 414 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 CGAP01215 116 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 BMP5P22003 454 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 CPA2P48052 419 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 NUDT2P50583 147 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 POLR2HP52434 150 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 SLC7A2P52569 658 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 NRF1Q16656 503 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 FBXL19-AS1Q494R0 122 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 WBP2NLQ6ICG8 309 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 VWA1Q6PCB0 445 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 C6orf89Q6UWU4 347 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 ATG4DQ86TL0 474 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 ATP6V1C2Q8NEY4 427 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 RNF128Q8TEB7 428 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 HOPXQ9BPY8 73 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 ECSITQ9BQ95 431 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 SFXN3Q9BWM7 321 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 STOML1Q9UBI4 398 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 FREM1Q5H8C1 2179 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 LRBAP50851 2863 aa17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 ANKHD1Q8IWZ3 2542 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-221ENST00000599833 PRORSD1PA6NEY8 169 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 SYT5O00445 386 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 ZNF208O43345 1280 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 SERPINB7O75635 380 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 HTR3AP46098 478 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 CARD18P57730 90 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 RAC3P60763 192 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 SP5Q6BEB4 398 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 ZNF787Q6DD87 383 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 TMPPEQ6ZT21 453 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 PATL1Q86TB9 770 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 SLC25A43Q8WUT9 341 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 ROBO4Q8WZ75 1007 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 STARD4Q96DR4 205 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 LRRC37BQ96QE4 947 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 TMEM181Q9P2C4 612 aa17.43■□□□□ 0.38
SHKBP1-221ENST00000599833 GJE1A6NN92 205 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 SMAD9O15198 467 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 SS18L1O75177 396 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 DCTN3O75935 186 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 CRHP06850 196 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 C8BP07358 591 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 IMPDH2P12268 514 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 ENPP1P22413 925 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 DIO1P49895 249 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 MYBPHQ13203 477 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 SGCBQ16585 318 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 ERICH5Q6P6B1 374 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 CHMP1BQ7LBR1 199 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 BTLAQ7Z6A9 289 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 ARPINQ7Z6K5 226 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 RBM45Q8IUH3 476 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 MICU2Q8IYU8 434 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 BHLHE22Q8NFJ8 381 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 CPNE4Q96A23 557 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 OR5B2Q96R09 309 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 ARMC7Q9H6L4 198 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 KCNJ16Q9NPI9 418 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 SERINC1Q9NRX5 453 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 ABCA12Q86UK0 2595 aa17.42■□□□□ 0.38
SHKBP1-221ENST00000599833 A0A1B0GWA3 101 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 ZNF814B7Z6K7 855 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 M0R3H8 397 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 DVL2O14641 736 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 FZD7O75084 574 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 LYPD3O95274 346 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 THY1P04216 161 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 OPRM1P35372 400 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 CLK1P49759 484 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 GSK3BP49841 420 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 PSME3P61289 254 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 H3F3AP84243 136 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 EGR4Q05215 589 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 LIPEQ05469 1076 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 INTS11Q5TA45 600 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 GKAP1Q5VSY0 366 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms