RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ARL5BQ96KC2 179 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 BCO1Q9HAY6 547 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 PLSCR4Q9NRQ2 329 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 KLHL13Q9P2N7 655 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 EMC9Q9Y3B6 208 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 HDGFL3Q9Y3E1 203 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 MYO9AB2RTY4 2548 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 ZNF208O43345 1280 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 CYTIPO60759 359 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 PMS2P2O95744 297 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 NPPAP01160 153 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 GKN3PP0CG01 181 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 PRG2P13727 222 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 UQCRBP14927 111 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 KIR2DL3P43628 341 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 GZMMP51124 257 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 POLR2HP52434 150 aaKnown RBP14.39□□□□□ -0.11
TRIM28-213ENST00000598355 MTPNP58546 118 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 MAPRE2Q15555 327 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF311Q5JNZ3 666 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF550Q7Z398 422 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 SERPINA11Q86U17 422 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 ATP6V1C2Q8NEY4 427 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 ROBO4Q8WZ75 1007 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 LURAP1Q96LR2 239 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 OR5B2Q96R09 309 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 PSD2Q9BQI7 771 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF559Q9BR84 538 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 PRRG4Q9BZD6 226 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 OPN3Q9H1Y3 402 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-213ENST00000598355 ARMC7Q9H6L4 198 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF232Q9UNY5 417 aa14.39□□□□□ -0.11
TRIM28-213ENST00000598355 CCDC168Q8NDH2 2452 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 TMED7-TICAM2A0A0A6YYA0 188 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 C5orf58C9J3I9 102 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 FZD7O75084 574 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 SMNDC1O75940 238 aaKnown RBP eCLIP14.38□□□□□ -0.11
TRIM28-213ENST00000598355 GOSR1O95249 250 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 KLK2P20151 261 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 ENPP1P22413 925 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 TACR3P29371 465 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 CD79BP40259 229 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 CPA2P48052 419 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 KRTAP10-9P60411 292 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 CSNK2A1P68400 391 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-213ENST00000598355 MYBPHQ13203 477 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 SNTB1Q13884 538 aaKnown RBP14.38□□□□□ -0.11
TRIM28-213ENST00000598355 DAZAP2Q15038 168 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-213ENST00000598355 REP15Q6BDI9 236 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 GTF2IRD2BQ6EKJ0 949 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 WBP2NLQ6ICG8 309 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 GTF2IRD2Q86UP8 949 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 ZZZ3Q8IYH5 903 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 C11orf65Q8NCR3 313 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 OR8J3Q8NGG0 315 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 TACO1Q9BSH4 297 aaKnown RBP14.38□□□□□ -0.11
TRIM28-213ENST00000598355 SPATA5L1Q9BVQ7 753 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 OR11A1Q9GZK7 315 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 CACYBPQ9HB71 228 aaKnown RBP14.38□□□□□ -0.11
TRIM28-213ENST00000598355 ELOVL5Q9NYP7 299 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 CLEC4AQ9UMR7 237 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 PROCRQ9UNN8 238 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 TMED7Q9Y3B3 224 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 CAPN7Q9Y6W3 813 aa14.38□□□□□ -0.11
TRIM28-213ENST00000598355 OTOGQ6ZRI0 2925 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 IGKV3D-15A0A087WSY6 115 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 TMEM72A0PK05 275 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 TUBAL3A6NHL2 446 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 TMEM229AB2RXF0 380 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 GCM2O75603 506 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-213ENST00000598355 CTAG2O75638 210 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 PLGP00747 810 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-213ENST00000598355 FESP07332 822 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 SLC6A2P23975 617 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 PCGF2P35227 344 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 CPOXP36551 454 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 CTBP2P56545 445 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 H3F3AP84243 136 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 SF3A3Q12874 501 aaKnown RBP eCLIP14.37□□□□□ -0.112e-6■■■■■ 27.3
TRIM28-213ENST00000598355 CAPRIN1Q14444 709 aaKnown RBP14.37□□□□□ -0.11
TRIM28-213ENST00000598355 PDK3Q15120 406 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 NANOGP8Q6NSW7 305 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 PPP4R4Q6NUP7 873 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 C6orf89Q6UWU4 347 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 SNX32Q86XE0 403 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 CALHM3Q86XJ0 350 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 KRT73Q86Y46 540 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 LSMEM1Q8N8F7 131 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF610Q8N9Z0 462 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 C3orf49Q96BT1 292 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 LRRC58Q96CX6 371 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 REXO5Q96IC2 774 aaKnown RBP14.37□□□□□ -0.11
TRIM28-213ENST00000598355 DACH2Q96NX9 599 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 SLC39A3Q9BRY0 314 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 NANOGQ9H9S0 305 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 KLHL9Q9P2J3 617 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 ANGPT4Q9Y264 503 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 TRAPPC4Q9Y296 219 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 TESMINQ9Y4I5 508 aa14.37□□□□□ -0.11
TRIM28-213ENST00000598355 IGHV3-15A0A0B4J1V0 119 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms