RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ADAMTS16Q8TE57 1224 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 NINJ1Q92982 152 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 SCMH1Q96GD3 660 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 TMEM41AQ96HV5 264 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 DHRS1Q96LJ7 313 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 GNRHR2Q96P88 292 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF347Q96SE7 839 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 PIP5K1AQ99755 562 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF559Q9BR84 538 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ADAM19Q9H013 955 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 SEMA6AQ9H2E6 1030 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 YY1AP1Q9H869 796 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 NMNAT1Q9HAN9 279 aaPredicted RBP8.55□□□□□ -1.04
TRIM28-208ENST00000597172 RNPEPL1Q9HAU8 725 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 KLHL1Q9NR64 748 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 SDHAF3Q9NRP4 125 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 ACER3Q9NUN7 267 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 TUBA8Q9NY65 449 aaPredicted RBP8.55□□□□□ -1.04
TRIM28-208ENST00000597172 PPP4R1LQ9P1A2 415 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 STX18Q9P2W9 335 aaKnown RBP8.55□□□□□ -1.04
TRIM28-208ENST00000597172 RIMS3Q9UJD0 308 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 FBXL2Q9UKC9 423 aa8.55□□□□□ -1.04
TRIM28-208ENST00000597172 TGP01266 2768 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 A0A1B0GWA3 101 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 LRRC3CA6NJW4 275 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CPSF4LA6NMK7 179 aaKnown RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CCL21O00585 134 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 PEX1O43933 1283 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 NME2P1O60361 137 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CDC40O60508 579 aaKnown RBP eCLIP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 OR5F1O95221 314 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 RFPL3SP0C7P2 107 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 FCGR1AP12314 374 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CD46P15529 392 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 NME2P22392 152 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 LIMS1P48059 325 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 MEOX1P50221 254 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CDH12P55289 794 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 DLX5P56178 289 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CBFBQ13951 182 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 GANABQ14697 944 aaKnown RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF766Q5HY98 468 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 ARSKQ6UWY0 536 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 PACS2Q86VP3 889 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 RANBP3LQ86VV4 465 aaPredicted RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 TMCO5AQ8N6Q1 288 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 TOR1AIP2Q8NFQ8 470 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 OR2M7Q8NG81 312 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 OR4C15Q8NGM1 316 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 OR1J4Q8NGS1 313 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CENPNQ96H22 339 aaPredicted RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 PRRC1Q96M27 445 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 NPAS1Q99742 590 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 FAM173AQ9BQD7 235 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 PRSS27Q9BQR3 290 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 FUZQ9BT04 418 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 TRIM2Q9C040 744 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 POLR2J2Q9GZM3 115 aaKnown RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 POLR2J3Q9H1A7 115 aaKnown RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 TMEM27Q9HBJ8 222 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 MAN2C1Q9NTJ4 1040 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 DNAJB9Q9UBS3 223 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 TESQ9UGI8 421 aaKnown RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 FAM32AQ9Y421 112 aaKnown RBP8.54□□□□□ -1.04
TRIM28-208ENST00000597172 TESMINQ9Y4I5 508 aa8.54□□□□□ -1.04
TRIM28-208ENST00000597172 A0A0B4J2E0 115 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 TRGV8A0A0C4DH27 118 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 A0A1B0GX12 115 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 TRAPPC13A5PLN9 417 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 ETV2O00321 342 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 ZIC3O60481 467 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 DEAF1O75398 565 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 CBR3O75828 277 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 PGCP20142 388 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 RRM2P31350 389 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SLC1A3P43003 542 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SLC6A8P48029 635 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 CCR4P51679 360 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SUMO3P55854 103 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SESN3P58005 492 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 TAS2R41P59536 307 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 LSM11P83369 360 aaKnown RBP eCLIP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SLC34A1Q06495 639 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 QPRTQ15274 297 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SEC23BQ15437 767 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 WBP2NLQ6ICG8 309 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF613Q6PF04 617 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 TBPL2Q6SJ96 375 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 LINC00114Q6XXX2 140 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 WDR88Q6ZMY6 472 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 MEX3BQ6ZN04 569 aaKnown RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 PLEKHM3Q6ZWE6 761 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 GALNTL5Q7Z4T8 443 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 CYP4Z1Q86W10 505 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 NKAIN4Q8IVV8 208 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 OFCC1Q8IZS5 231 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 HS3ST5Q8IZT8 346 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 CADM2Q8N3J6 435 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 OR52J3Q8NH60 311 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms