RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CPPED1Q9BRF8 314 aaPredicted RBP11.14□□□□□ -0.63
UPF1-203ENST00000594504 BDH2Q9BUT1 245 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 A4GALTQ9NPC4 353 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.14□□□□□ -0.63
UPF1-203ENST00000594504 MED17Q9NVC6 651 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 ICAM5Q9UMF0 924 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 SLC35A3Q9Y2D2 325 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 CARD8Q9Y2G2 431 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 EMC9Q9Y3B6 208 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 SETD2Q9BYW2 2564 aaPredicted RBP11.14□□□□□ -0.63
UPF1-203ENST00000594504 DSPPQ9NZW4 1301 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 C7orf72A4D263 438 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 KIAA1324LA8MWY0 1029 aaPredicted RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 OIP5O43482 229 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 SS18L1O75177 396 aaPredicted RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 SYNGR4O95473 234 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 NUDT14O95848 222 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 NPPAP01160 153 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 NUDT7P0C024 238 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 FCGR2AP12318 317 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 ZNF17P17021 662 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 RPS4Y1P22090 263 aaKnown RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 NR1H2P55055 460 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 RAC1P63000 192 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 SKP2Q13309 424 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 CYLC2Q14093 348 aaPredicted RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 NDUFAF6Q330K2 333 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 MMEL1Q495T6 779 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 GCNT6Q5T4J0 391 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 PRAMEF8Q5VWM4 474 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 PRAMEF7Q5VXH5 474 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 HBMQ6B0K9 141 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 PRSS57Q6UWY2 283 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 ZNF704Q6ZNC4 412 aaPredicted RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 C20orf204Q6ZNR8 217 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 PLEKHM3Q6ZWE6 761 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 PEX5LQ8IYB4 626 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 GTPBP8Q8N3Z3 284 aaPredicted RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 TMCO5AQ8N6Q1 288 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 FAM71CQ8NEG0 241 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 OR5W2Q8NH69 310 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 OR2V1Q8NHB1 315 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 ZG16BQ96DA0 208 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 TMEM19Q96HH6 336 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 ANKRD27Q96NW4 1050 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 LAT2Q9GZY6 243 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 QRSL1Q9H0R6 528 aaKnown RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 IKZF5Q9H5V7 419 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 FAM53CQ9NYF3 392 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 ARMCX1Q9P291 453 aa11.13□□□□□ -0.63
UPF1-203ENST00000594504 MCTS1Q9ULC4 181 aaKnown RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 ANKHD1Q8IWZ3 2542 aaKnown RBP11.13□□□□□ -0.63
UPF1-203ENST00000594504 A0A0G2JPF8 293 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 LOC100653049A0A140TA62 436 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 HNRNPCL2B2RXH8 293 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 HNRNPCL3B7ZW38 293 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 C5orf58C9J3I9 102 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 INAFM1C9JVW0 142 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 MRASO14807 208 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 ADAMDEC1O15204 470 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 HNRNPCL1O60812 293 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 DNAJA2O60884 412 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 KRT34O76011 436 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 CNOT4O95628 575 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 DBIP07108 87 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 UBTFL6P0CB48 400 aaPredicted RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 HNRNPCL4P0DMR1 293 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 ARAFP10398 606 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 NID1P14543 1247 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 IL7RP16871 459 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 SFTPDP35247 375 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 PGM1P36871 562 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 EIF1P41567 113 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 CCR4P51679 360 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 KCNJ10P78508 379 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 CBFBQ13951 182 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 BEX5Q5H9J7 111 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 REP15Q6BDI9 236 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 NUFIP2Q7Z417 695 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 MTDHQ86UE4 582 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 LILRA2Q8N149 483 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 PCYOX1LQ8NBM8 494 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 ATP6V1C2Q8NEY4 427 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 RP9Q8TA86 221 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 BBS10Q8TAM1 723 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 GPR119Q8TDV5 335 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 WDR60Q8WVS4 1066 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 IGFBPL1Q8WX77 278 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 MAL2Q969L2 176 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 ZNF524Q96C55 264 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 THUMPD3Q9BV44 507 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 CCDC106Q9BWC9 280 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 SRXN1Q9BYN0 137 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 GSX2Q9BZM3 304 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 ACTR6Q9GZN1 396 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 TMEM38AQ9H6F2 299 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 CACYBPQ9HB71 228 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 BCL2L10Q9HD36 194 aa11.12□□□□□ -0.63
UPF1-203ENST00000594504 EXOSC3Q9NQT5 275 aaKnown RBP11.12□□□□□ -0.63
UPF1-203ENST00000594504 STOML1Q9UBI4 398 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms