RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 CHEK2O96017 543 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 IGHV4-39P01824 125 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 RFPL3SP0C7P2 107 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 HKR1P10072 659 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 CDH1P12830 882 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF37AP17032 561 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 HOXB6P17509 224 aaKnown RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 CHRM3P20309 590 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 SAT1P21673 171 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 CRYGSP22914 178 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 HRH2P25021 359 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 TRPC1P48995 793 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF140P52738 457 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 RPS7P62081 194 aaKnown RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 LCP2Q13094 533 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 TGFBIQ15582 683 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 NSDHLQ15738 373 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 SYTL3Q4VX76 610 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 RBM48Q5RL73 367 aaKnown RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 DCST1Q5T197 706 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 CLEC6AQ6EIG7 209 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 DCDC5Q6ZRR9 648 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF550Q7Z398 422 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 SERPINA9Q86WD7 417 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 LACC1Q8IV20 430 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 PIANPQ8IYJ0 282 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF786Q8N393 782 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 SPATA6LQ8N4H0 392 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 TMEM156Q8N614 296 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 C9orf106Q8NAJ2 232 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 NFAM1Q8NET5 270 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 OR5T3Q8NGG3 340 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 HDAC2Q92769 488 aaKnown RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 ZMYND19Q96E35 227 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 PLEKHA8Q96JA3 519 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 OR2A5Q96R48 311 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 SLC39A3Q9BRY0 314 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 FSD1LQ9BXM9 530 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 SLCO5A1Q9H2Y9 848 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 EXO5Q9H790 373 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 TMEM160Q9NX00 188 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 RHBDL2Q9NX52 303 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 MARCH4Q9P2E8 410 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 LEF1Q9UJU2 399 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 FAF1Q9UNN5 650 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-209ENST00000589941 PCDHGB1Q9Y5G3 927 aa6.96□□□□□ -1.3
SMAD4-209ENST00000589941 TRBV5-4A0A0C4DH59 114 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 A0A1W2PPW3 197 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 FAM234BA2RU67 622 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 SAGE2PA6NJ88 616 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 C2orf81A6NN90 581 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 A8MUA0 341 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 HAT1O14929 419 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 CASKO14936 926 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ANGPT2O15123 496 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF354AO60765 605 aaPredicted RBP6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ESRRBO95718 433 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 CYC1P08574 325 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 CCL3P10147 92 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 GSTM2P28161 218 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 TIMP3P35625 211 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 CDKN1AP38936 164 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 SOX3P41225 446 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ALDH3A2P51648 485 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 HNRNPFP52597 415 aaKnown RBP6.95□□□□□ -1.3
SMAD4-209ENST00000589941 RELAQ04206 551 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 LIPEQ05469 1076 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 CRYZQ08257 329 aaKnown RBP6.95□□□□□ -1.3
SMAD4-209ENST00000589941 EPS8Q12929 822 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 CBX3Q13185 183 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 DAG1Q14118 895 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 OR4D1Q15615 310 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 SMU1Q2TAY7 513 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF750Q32MQ0 723 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 VPS26BQ4G0F5 336 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 XKR6Q5GH73 641 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 XAF1Q6GPH4 301 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 NANOGP8Q6NSW7 305 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 NIPAL1Q6NVV3 410 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 IL20RBQ6UXL0 311 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 KCTD8Q6ZWB6 473 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 RPS27LQ71UM5 84 aaKnown RBP6.95□□□□□ -1.3
SMAD4-209ENST00000589941 DCUN1D3Q8IWE4 304 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 DDIASQ8IXT1 998 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 LNX2Q8N448 690 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 LIX1Q8N485 282 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 PTGR2Q8N8N7 351 aaPredicted RBP6.95□□□□□ -1.3
SMAD4-209ENST00000589941 MINDY2Q8NBR6 621 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 APCDD1LQ8NCL9 501 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ZCCHC10Q8TBK6 192 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 RAB2BQ8WUD1 216 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF566Q969W8 418 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 SLC22A18Q96BI1 424 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ANKRD9Q96BM1 317 aaPredicted RBP6.95□□□□□ -1.3
SMAD4-209ENST00000589941 PPWD1Q96BP3 646 aaKnown RBP6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ULK4Q96C45 1275 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 PHF21BQ96EK2 531 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 FBXL20Q96IG2 436 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 C1orf50Q9BV19 199 aa6.95□□□□□ -1.3
SMAD4-209ENST00000589941 ANGPTL4Q9BY76 406 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms