RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ZNF730Q6ZMV8 503 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 Q6ZPB1 254 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 RTL4Q6ZR62 310 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PTCHD4Q6ZW05 846 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PLEKHM3Q6ZWE6 761 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 UTS2BQ765I0 119 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TRILQ7L0X0 811 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ANKRD46Q86W74 232 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TRIM48Q8IWZ4 208 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ADGRF3Q8IZF5 1079 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TAGAPQ8N103 731 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 Q8N402 240 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ANKRD53Q8N9V6 530 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 L3MBTL4Q8NA19 623 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 AQP11Q8NBQ7 271 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 KCT2Q8NC54 265 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 SLC37A3Q8NCC5 494 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CHST14Q8NCH0 376 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 MAPK1IP1LQ8NDC0 245 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 OR4K2Q8NGD2 314 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 OR52N2Q8NGI0 321 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 OR8J1Q8NGP2 316 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 OR10Q1Q8NGQ4 319 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CLHC1Q8NHS4 586 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 VANGL1Q8TAA9 524 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 SPPL2AQ8TCT8 520 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ZNF431Q8TF32 576 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 SELENOMQ8WWX9 145 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 WFDC12Q8WWY7 111 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 OR1E3Q8WZA6 343 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 RBPMSQ93062 196 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 UBE2FQ969M7 185 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 MYEOVQ96EZ4 313 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ZBED6CLQ96FA7 236 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 SCMH1Q96GD3 660 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PPP1R16AQ96I34 528 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TPD52L3Q96J77 140 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 WDR92Q96MX6 357 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 RPRD1AQ96P16 312 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 QRFPRQ96P65 431 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TSSK3Q96PN8 268 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TAAR6Q96RI8 345 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 SLC38A3Q99624 504 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 NIPSNAP1Q9BPW8 284 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 KRTAP4-12Q9BQ66 201 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 C7orf50Q9BRJ6 194 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 C2orf49Q9BVC5 232 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 SSBP4Q9BWG4 385 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 POLR2J2Q9GZM3 115 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 MED28Q9H204 178 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PPIL3Q9H2H8 161 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 SLC6A15Q9H2J7 730 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ELOVL6Q9H5J4 265 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TMEM38AQ9H6F2 299 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PPP1R3EQ9H7J1 279 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 HEXA-AS1Q9H8Q6 139 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 GALNT9Q9HCQ5 603 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ZNF275Q9NSD4 429 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 BEX4Q9NWD9 120 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 COPZ2Q9P299 210 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ACSL5Q9ULC5 683 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CBLCQ9ULV8 474 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 MGAT4BQ9UQ53 548 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ANGPT4Q9Y264 503 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 RUVBL1Q9Y265 456 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 GSTK1Q9Y2Q3 226 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PRELID3BQ9Y3B1 194 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 EXOSC1Q9Y3B2 195 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 ZNF175Q9Y473 711 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 MAB21L2Q9Y586 359 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 NUBP2Q9Y5Y2 271 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 NPTNQ9Y639 398 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CDH10Q9Y6N8 788 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ENPP4Q9Y6X5 453 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 NCOA6Q14686 2063 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 TRBV23OR9-2A0A075B6M9 112 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 TRBV5-4A0A0C4DH59 114 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 TRDV1A0A1B0GX56 115 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 ANKRD61A6NGH8 418 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 ISM1B1AKI9 464 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 IDSB3KWA1 339 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 H0YC42 278 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 M0R129 80 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 RNASET2O00584 256 aaKnown RBP3.82□□□□□ -1.8
LIG3-211ENST00000588713 INSIG1O15503 277 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 ZNHIT1O43257 154 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 CHST10O43529 356 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 FZD6O60353 706 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 OR1I1O60431 355 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 PRAMEF2O60811 474 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 PRAF2O60831 178 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 ENTPD6O75354 484 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 ITGA10O75578 1167 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 LEFTY1O75610 366 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 STK16O75716 305 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 GADD45GO95257 159 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 PDYNP01213 254 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 IFNW1P05000 195 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 PCCBP05166 539 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 C8GP07360 202 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms