RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	HDAC3	O15379	428 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	LRRTM2	O43300	516 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	SNAP91	O60641	907 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	UGT1A9	O60656	530 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	B3GAT3	O94766	335 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ECD	O95905	644 aa	Predicted RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	IGHV4-59	P01825	116 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	HLA-DRA	P01903	254 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	KRT7	P08729	469 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	SNRPA	P09012	282 aa	Known RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ADORA3	P0DMS8	318 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PPIAL4G	P0DN37	164 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	GFAP	P14136	432 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	UGT1A4	P22310	534 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	GIF	P27352	417 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	LAP3	P28838	519 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	RRM2	P31350	389 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	FOXN2	P32314	431 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	UGT1A3	P35503	534 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	UGT1A5	P35504	534 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PPP1R2	P41236	205 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	HOXA1	P49639	335 aa	Predicted RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	SLC26A2	P50443	739 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	XG	P55808	180 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	RPS8	P62241	208 aa	Known RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	POLR2G	P62487	172 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	CSNK2B	P67870	215 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	MRPS15	P82914	257 aa	Known RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	CDK16	Q00536	496 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	POU3F1	Q03052	451 aa	Predicted RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	KLRC3	Q07444	240 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	SCRN3	Q0VDG4	424 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	RIG	Q13278	110 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	POU6F1	Q14863	301 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	CHI3L2	Q15782	390 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	HADH	Q16836	314 aa	Known RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ZBED5	Q49AG3	693 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	FAM74A3	Q4VXF1	159 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	CYS1	Q717R9	158 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	GPR142	Q7Z601	462 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	AKAP14	Q86UN6	197 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	RALGPS2	Q86X27	583 aa	Predicted RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF677	Q86XU0	584 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TCAIM	Q8N3R3	496 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ASCC1	Q8N9N2	400 aa	Known RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	OR4F17	Q8NGA8	305 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	OR13A1	Q8NGR1	328 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	OR4F5	Q8NH21	305 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	LHFPL5	Q8TAF8	219 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	NANP	Q8TBE9	248 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ENKUR	Q8TC29	256 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	FCAMR	Q8WWV6	532 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ART4	Q93070	314 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PNPLA2	Q96AD5	504 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PAGE5	Q96GU1	130 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TSNARE1	Q96NA8	513 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TGM7	Q96PF1	710 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	OR4F4	Q96R69	305 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	DOK1	Q99704	481 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	NKX3-1	Q99801	234 aa	Predicted RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TTYH2	Q9BSA4	534 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF717	Q9BY31	904 aa	Predicted RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	UGT1A7	Q9HAW7	530 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	UGT1A10	Q9HAW8	530 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	UGT1A8	Q9HAW9	530 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	SGK2	Q9HBY8	427 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	MAN2C1	Q9NTJ4	1040 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	MRPL39	Q9NYK5	338 aa	Known RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TAS2R1	Q9NYW7	299 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TMEM9	Q9P0T7	183 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	PIPOX	Q9P0Z9	390 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	GNG12	Q9UBI6	72 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	SLC7A8	Q9UHI5	535 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	WIPI2	Q9Y4P8	454 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	CPQ	Q9Y646	472 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ARHGEF28	Q8N1W1	1705 aa	Known RBP	4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TECPR2	O15040	1411 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF532	Q9HCE3	1301 aa		4.21	□□□□□ -1.74
SS18-223	ENST00000583595	TRIP12	Q14669	1992 aa	Predicted RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	PXDN	Q92626	1479 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	LOC390937	A0A1W2PQ73	354 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	OR6C65	A6NJZ3	312 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	OR2AG2	A6NM03	316 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	TRPC5OS	A6NMA1	111 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595		A8MU76	341 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	FAM25A	B3EWG3	89 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	FAM25C	B3EWG5	89 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	FAM25G	B3EWG6	89 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595		H0YJX3	145 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	C16orf97	H3BN30	126 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	hCG_2039718	K7EN88	272 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595		K7ERI5	159 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595		L7N2F9	121 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	PSMD12	O00232	456 aa	Predicted RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SLC1A7	O00341	560 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	ABCD4	O14678	606 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	TRDMT1	O14717	391 aa	Known RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	STX7	O15400	261 aa	Known RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	INSIG1	O15503	277 aa		4.2	□□□□□ -1.74

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