RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CALML5Q9NZT1 146 aa12.84□□□□□ -0.35
SMARCE1-216ENST00000580419 MALT1Q9UDY8 824 aa12.84□□□□□ -0.35
SMARCE1-216ENST00000580419 SONP18583 2426 aaKnown RBP12.84□□□□□ -0.35
SMARCE1-216ENST00000580419 ATRQ13535 2644 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 CENPVL1A0A0U1RR11 272 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 A0A1W2PNR3 127 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 PRAMEF27A3QJZ7 478 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 OR5H1A6NKK0 313 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ZNF716A6NP11 495 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 KLF11O14901 512 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ADAP00813 363 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 DBIP07108 87 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 CD3EP07766 207 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ALDOCP09972 364 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 DANCRP0C864 163 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 UQCRBP14927 111 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 SLC1A3P43003 542 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 MRPL19P49406 292 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 RPS4XP62701 263 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ZNF672Q499Z4 452 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 PDCD4Q53EL6 469 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 HHATQ5VTY9 493 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 FBXW9Q5XUX1 488 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ATG16L1Q676U5 607 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 OR7E24Q6IFN5 339 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 TNFAIP8L2Q6P589 184 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ANKRD46Q86W74 232 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ADGRG3Q86Y34 549 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 LILRB1Q8NHL6 650 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 MUCL1Q96DR8 90 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 TRMT61AQ96FX7 289 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 Q96MF0 132 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 PANX1Q96RD7 426 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 ZBTB18Q99592 522 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 KCNK9Q9NPC2 374 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 SDR39U1Q9NRG7 319 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 TMEM181Q9P2C4 612 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 MGAT4BQ9UQ53 548 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 DSPPQ9NZW4 1301 aa12.83□□□□□ -0.36
SMARCE1-216ENST00000580419 DIAPH2O60879 1101 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 CPSF4O95639 269 aaKnown RBP12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 GGT1P19440 569 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 WDR4P57081 412 aaKnown RBP12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 PLAURQ03405 335 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 CHRNEQ04844 493 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 PRAMEF8Q5VWM4 474 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 PRAMEF7Q5VXH5 474 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 DTX2Q86UW9 622 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 RNF130Q86XS8 419 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 CLEC4FQ8N1N0 589 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 ZNF433Q8N7K0 673 aaPredicted RBP12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 C1orf162Q8NEQ5 155 aaPredicted RBP12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 RFWD2Q8NHY2 731 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 ZNF563Q8TA94 476 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 AKAP1Q92667 903 aaKnown RBP eCLIP12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 RAB8BQ92930 207 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 ZG16BQ96DA0 208 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 PERPQ96FX8 193 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 TEX37Q96LM6 180 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 OR52E6Q96RD3 313 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 TRIM2Q9C040 744 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 AMBRA1Q9C0C7 1298 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 ADAM19Q9H013 955 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 QRSL1Q9H0R6 528 aaKnown RBP12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 CTPS2Q9NRF8 586 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 FAIMQ9NVQ4 179 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 PNPOQ9NVS9 261 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 PARPBPQ9NWS1 579 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 ZIM2Q9NZV7 527 aa12.82□□□□□ -0.36
SMARCE1-216ENST00000580419 ALPK2Q86TB3 2170 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 TMEM120BA0PK00 339 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 H7C1Q1 480 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 PLAUP00749 431 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 POLR2HP52434 150 aaKnown RBP12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 CASP9P55211 416 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 UFM1P61960 85 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 SLC35A1P78382 337 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 IRX1P78414 480 aaPredicted RBP12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 PPA1Q15181 289 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 GPAT3Q53EU6 434 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 RNF220Q5VTB9 566 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 PAQR6Q6TCH4 344 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 PEX5LQ8IYB4 626 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 ZNF100Q8IYN0 542 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 C17orf78Q8N4C9 275 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 ATP6V1C2Q8NEY4 427 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 DDIT4LQ96D03 193 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 PPP1R36Q96LQ0 422 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 MUS81Q96NY9 551 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 SF3B5Q9BWJ5 86 aaKnown RBP12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 TMEM45AQ9NWC5 275 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 TAS2R16Q9NYV7 291 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 DCTN4Q9UJW0 460 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 NOSIPQ9Y314 301 aaKnown RBP12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 GMEB1Q9Y692 573 aa12.81□□□□□ -0.36
SMARCE1-216ENST00000580419 A0A096LPI6 279 aa12.8□□□□□ -0.36
SMARCE1-216ENST00000580419 CDHR4A6H8M9 788 aa12.8□□□□□ -0.36
SMARCE1-216ENST00000580419 CFAP73A6NFT4 308 aa12.8□□□□□ -0.36
SMARCE1-216ENST00000580419 PDLIM1O00151 329 aa12.8□□□□□ -0.36
SMARCE1-216ENST00000580419 RFXANKO14593 260 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms