RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 YES1P07947 543 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 GKN3PP0CG01 181 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 KLK2P20151 261 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 FKBP2P26885 142 aaKnown RBP21.28■■□□□ 1
SHMT1-206ENST00000579558 SLC1A3P43003 542 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 GCNT6Q5T4J0 391 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 RNF220Q5VTB9 566 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 PRAMEF8Q5VWM4 474 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 PRAMEF7Q5VXH5 474 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 NUFIP2Q7Z417 695 aaKnown RBP21.28■■□□□ 1
SHMT1-206ENST00000579558 BBS10Q8TAM1 723 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 DNAJA3Q96EY1 480 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 OR11A1Q9GZK7 315 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 BCL2L10Q9HD36 194 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 ZNF226Q9NYT6 803 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 LEF1Q9UJU2 399 aaPredicted RBP21.28■■□□□ 1
SHMT1-206ENST00000579558 OSGIN1Q9UJX0 560 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 IFT52Q9Y366 437 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 TMED7Q9Y3B3 224 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 HDGFL3Q9Y3E1 203 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 TRBV5-3A0A0A0MS03 114 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 CYTIPO60759 359 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 TACR3P29371 465 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 RASGEF1BQ0VAM2 473 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 ZSWIM7Q19AV6 140 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 ANKRD34AQ69YU3 496 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 CLIP4Q8N3C7 705 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 ZHX1-C8orf76Q96EF9 292 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 ARL5BQ96KC2 179 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 PSD2Q9BQI7 771 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 SPATA9Q9BWV2 254 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 LIME1Q9H400 295 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 ARMC7Q9H6L4 198 aa21.27■■□□□ 1
SHMT1-206ENST00000579558 PGM3O95394 542 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 PMS2P2O95744 297 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 TROVE2P10155 538 aaKnown RBP eCLIP21.26■□□□□ 0.99
SHMT1-206ENST00000579558 ARAFP10398 606 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 CLK1P49759 484 aaKnown RBP21.26■□□□□ 0.99
SHMT1-206ENST00000579558 HSP90B2PQ58FF3 399 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 ZNF311Q5JNZ3 666 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 TFAP2EQ6VUC0 442 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 STAC2Q6ZMT1 411 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 C10orf111Q8N326 155 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 NFKBIDQ8NI38 313 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 ZC3HAV1LQ96H79 300 aaKnown RBP21.26■□□□□ 0.99
SHMT1-206ENST00000579558 TMEM120AQ9BXJ8 343 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 BCO1Q9HAY6 547 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 C6orf203Q9P0P8 240 aaPredicted RBP21.26■□□□□ 0.99
SHMT1-206ENST00000579558 ST6GALNAC2Q9UJ37 374 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 ING1Q9UK53 422 aaPredicted RBP21.26■□□□□ 0.99
SHMT1-206ENST00000579558 CORO2BQ9UQ03 480 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 NDUFAF1Q9Y375 327 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 GMEB1Q9Y692 573 aa21.26■□□□□ 0.99
SHMT1-206ENST00000579558 HRNRQ86YZ3 2850 aaPredicted RBP21.26■□□□□ 0.99
SHMT1-206ENST00000579558 TMEM72A0PK05 275 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 EVPLLA8MZ36 301 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 ZNF208O43345 1280 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 ACAA2P42765 397 aaKnown RBP21.25■□□□□ 0.99
SHMT1-206ENST00000579558 METTL21CQ5VZV1 264 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 DLEU7Q6UYE1 221 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 MTDHQ86UE4 582 aaKnown RBP21.25■□□□□ 0.99
SHMT1-206ENST00000579558 CADM2Q8N3J6 435 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 DDIT4LQ96D03 193 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 ZNF300Q96RE9 604 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-206ENST00000579558 IKZF5Q9H5V7 419 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 FGFR1OP2Q9NVK5 253 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 EDARQ9UNE0 448 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 CHST2Q9Y4C5 530 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 ABCA4P78363 2273 aa21.25■□□□□ 0.99
SHMT1-206ENST00000579558 AKAP6Q13023 2319 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 ANGPT2O15123 496 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 CRYGSP22914 178 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 IST1P53990 364 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 OR2B6P58173 313 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 COPZ1P61923 177 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 CDK6Q00534 326 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 ABLIM2Q6H8Q1 611 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 DHDDSQ86SQ9 333 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 LSRQ86X29 649 aaPredicted RBP21.24■□□□□ 0.99
SHMT1-206ENST00000579558 NINJ1Q92982 152 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 CPPED1Q9BRF8 314 aaPredicted RBP21.24■□□□□ 0.99
SHMT1-206ENST00000579558 ADAM19Q9H013 955 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 TMEM181Q9P2C4 612 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 PRDM4Q9UKN5 801 aa21.24■□□□□ 0.99
SHMT1-206ENST00000579558 ZNF724A8MTY0 619 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 DNPH1O43598 174 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 VIMP08670 466 aaKnown RBP21.23■□□□□ 0.99
SHMT1-206ENST00000579558 PRG2P13727 222 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 ETS2P15036 469 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 PPP3CBP16298 524 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 GPX2P18283 190 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 MAP2K6P52564 334 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 RUNDC3AQ59EK9 446 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 WBP2NLQ6ICG8 309 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 REEP3Q6NUK4 255 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 SERPINA11Q86U17 422 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 TSPEARQ8WU66 669 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 ZNF775Q96BV0 537 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-206ENST00000579558 PLEKHF2Q9H8W4 249 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 TRAPPC4Q9Y296 219 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms