RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 RSBN1Q5VWQ0 802 aaPredicted RBP9.27□□□□□ -0.93
VPS53-220ENST00000576149 NR2C2APQ86WQ0 139 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 CMIPQ8IY22 773 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 CADM2Q8N3J6 435 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 Q8N402 240 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 OR6C4Q8NGE1 309 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 FAM174AQ8TBP5 190 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 ZNF285Q96NJ3 590 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 CTRCQ99895 268 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 GDF15Q99988 308 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 PPIL3Q9H2H8 161 aaKnown RBP9.27□□□□□ -0.93
VPS53-220ENST00000576149 C2orf42Q9NWW7 574 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 CHRNA9Q9UGM1 479 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 PCDHGB7Q9Y5F8 929 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 OR2W5A6NFC9 320 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 EFCAB7A8K855 629 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 A8MU76 341 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 TFECO14948 347 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 SLC19A2O60779 497 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 IL33O95760 270 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 GYPBP06028 91 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 PROS1P07225 676 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 SLC2A2P11168 524 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 CHRNB1P11230 501 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 GABRA4P48169 554 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 NKX2-5P52952 324 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 ACTC1P68032 377 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ACTA1P68133 377 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 E2F1Q01094 437 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 FUT7Q11130 342 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 POU4F2Q12837 409 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 TRAM1Q15629 374 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ARL9Q6T311 187 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 VASH1Q7L8A9 365 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 SYT13Q7L8C5 426 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 FAM160A2Q8N612 972 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 LINC00469Q8N7U9 141 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 SCAIQ8N9R8 606 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 C16orf52Q8NHV5 167 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 RLN3Q8WXF3 142 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 C4orf36Q96KX1 117 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ZNF578Q96N58 590 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 LRFN5Q96NI6 719 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ERMAPQ96PL5 475 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 OR10A5Q9H207 317 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ERVMER34-1Q9H9K5 563 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 MOV10Q9HCE1 1003 aaKnown RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 LRIT1Q9P2V4 623 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 RPS6KB2Q9UBS0 482 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 MALT1Q9UDY8 824 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ZNF221Q9UK13 617 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ADAM30Q9UKF2 790 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ERVK-19Q9WJR5 959 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 NOSIPQ9Y314 301 aaKnown RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 A0A087WUJ7 227 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 B4DXG7 233 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 J3QLW9 94 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ZNF749O43361 778 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 NDUFB2O95178 105 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 CSF2P04141 144 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 KRT8P05787 483 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ZNF19P17023 458 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 MAOAP21397 527 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 KIR2DL3P43628 341 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 CAPZA2P47755 286 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 GPR143P51810 404 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 OR12D2P58182 307 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 IL18Q14116 193 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ELOCQ15369 112 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 NNATQ16517 81 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 TRIQKQ629K1 86 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 HBMQ6B0K9 141 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 BCORP1Q8N888 145 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 NKAIN3Q8N8D7 197 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ZNF615Q8N8J6 731 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 OR5M3Q8NGP4 307 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 OR4C3Q8NH37 302 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 SMAP2Q8WU79 429 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 MARCH7Q9H992 704 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 UCK1Q9HA47 277 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 NEK6Q9HC98 313 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 MKKSQ9NPJ1 570 aaPredicted RBP9.26□□□□□ -0.93
VPS53-220ENST00000576149 B3GAT2Q9NPZ5 323 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ITGB1BP2Q9UKP3 347 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 ICAM5Q9UMF0 924 aa9.26□□□□□ -0.93
VPS53-220ENST00000576149 SERINC4A6NH21 518 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 SC5DO75845 299 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 CSTAP01040 98 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 WNT1P04628 370 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 TRAPPC2P0DI81 140 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 TRAPPC2BP0DI82 140 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 HIST1H1CP16403 213 aaKnown RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 SHC1P29353 583 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 DDOSTP39656 456 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 NR4A2P43354 598 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 PGDP52209 483 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 GAS6Q14393 721 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS53-220ENST00000576149 NDUFAF6Q330K2 333 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms