RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 STEAP2Q8NFT2 490 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 KBTBD8Q8NFY9 601 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 OR5D16Q8NGK9 328 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 OR2W6PQ8NHA6 318 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 PIWIL2Q8TC59 973 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 ZFP90Q8TF47 636 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 OR5P2Q8WZ92 322 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 JADE3Q92613 823 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 CPNE4Q96A23 557 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 MCUR1Q96AQ8 359 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 APOPT1Q96IL0 206 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 OR7D2Q96RA2 312 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 ZNF300Q96RE9 604 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 SDF2Q99470 211 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 C1orf50Q9BV19 199 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 ACTRT3Q9BYD9 372 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 TRIM2Q9C040 744 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 GP6Q9HCN6 339 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 STX18Q9P2W9 335 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 BOLA1Q9Y3E2 137 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 RNF115Q9Y4L5 304 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 GPC6Q9Y625 555 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 PRAMEF27A3QJZ7 478 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 C9JVG2 144 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 RNF223E7ERA6 249 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 FCMRO60667 390 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 CYTIPO60759 359 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ADAM11O75078 769 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 PEX11AO75192 247 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 SPAG7O75391 227 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 UGT2B17O75795 530 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 PRKD3O94806 890 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 PGM3O95394 542 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 IGHV4-39P01824 125 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 G6PDP11413 515 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 HPGDP15428 266 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 IGHV1-2P23083 117 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ME2P23368 584 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ACVR1BP36896 505 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 HPCAL1P37235 193 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ETV4P43268 484 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 HSPA13P48723 471 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 C21orf58P58505 322 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 RPS4XP62701 263 aaKnown RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 RPS26P62854 115 aaKnown RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 BSPH1Q075Z2 132 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 FUT5Q11128 374 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 SELENBP1Q13228 472 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 SKP2Q13309 424 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ITGADQ13349 1161 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 TP53BP2Q13625 1128 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 QPRTQ15274 297 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ZNF141Q15928 474 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 MAPK14Q16539 360 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 CLEC12BQ2HXU8 276 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 TMEM201Q5SNT2 666 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 PDSS1Q5T2R2 415 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 PDZK1Q5T2W1 519 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 IL23RQ5VWK5 629 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 GTF2IRD2BQ6EKJ0 949 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ABLIM2Q6H8Q1 611 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 LRRC74BQ6ZQY2 392 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 Q6ZT83 130 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 CXXC5Q7LFL8 322 aaKnown RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 BHLHA15Q7RTS1 189 aaPredicted RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 GTF2IRD2Q86UP8 949 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 DTX2Q86UW9 622 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 STK32CQ86UX6 486 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 DDIASQ8IXT1 998 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 CLECL1Q8IZS7 167 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ZNF527Q8NB42 609 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 FAM71CQ8NEG0 241 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ATP6V1C2Q8NEY4 427 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 OR56A1Q8NGH5 318 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 OR5W2Q8NH69 310 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 OR5AK3PQ8NH89 298 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 AGR3Q8TD06 166 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 SFXN5Q8TD22 340 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ADAMTS15Q8TE58 950 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 SMAP2Q8WU79 429 aaPredicted RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 CKAP2Q8WWK9 683 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 HSD17B8Q92506 261 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 FBXW5Q969U6 566 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 ZNF775Q96BV0 537 aaPredicted RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 MRGPRX4Q96LA9 322 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 PPP3R2Q96LZ3 170 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 CGREF1Q99674 301 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 TRAF4Q9BUZ4 470 aaPredicted RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 HDHD5Q9BXW7 423 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 HOXD1Q9GZZ0 328 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 QRSL1Q9H0R6 528 aaKnown RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 SLCO5A1Q9H2Y9 848 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 HHATLQ9HCP6 504 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 LGALS13Q9UHV8 139 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 GDF2Q9UK05 429 aaPredicted RBP5.94□□□□□ -1.46
VPS53-213ENST00000572334 DTNAQ9Y4J8 743 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 SNX8Q9Y5X2 465 aa5.94□□□□□ -1.46
VPS53-213ENST00000572334 IGKV3D-15A0A087WSY6 115 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 SERINC4A6NH21 518 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ZNF716A6NP11 495 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms