RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PRPS1L1P21108 318 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 TLX1P31314 330 aaPredicted RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 SERPINF1P36955 418 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 EPHB3P54753 998 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 TAP2Q03519 686 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 IDNKQ5T6J7 187 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 PTCHD4Q6ZW05 846 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 GPR135Q8IZ08 494 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 FAM24BQ8N5W8 94 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 SLC24A4Q8NFF2 622 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 OR56B4Q8NH76 319 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 ISG20Q96AZ6 181 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 FAM120BQ96EK7 910 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 AARSD1Q9BTE6 412 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 CWH43Q9H720 699 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 NLE1Q9NVX2 485 aaPredicted RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 OR14J1Q9UGF5 321 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 FAM96BQ9Y3D0 163 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 OR51B4Q9Y5P0 310 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 KNL1Q8NG31 2342 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 C2orf78A6NCI8 922 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 M0R143 59 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 GAPDHSO14556 408 aaPredicted RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 TPST2O60704 377 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 PCDH8O95206 1070 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 BPIP17213 487 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 PRDX3P30048 256 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 CEACAM8P31997 349 aaPredicted RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 AGTR2P50052 363 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 INSM1Q01101 510 aaPredicted RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 MPPE1Q53F39 396 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 CTSL3PQ5NE16 218 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 C9orf64Q5T6V5 341 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 VTCN1Q7Z7D3 282 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 C7orf61Q8IZ16 206 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 SOSTQ9BQB4 213 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 MRI1Q9BV20 369 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 ZNF471Q9BX82 626 aaPredicted RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 FAM117AQ9C073 453 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 OR51V1Q9H2C8 321 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 TAS2R13Q9NYV9 303 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 TMEM238C9JI98 176 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 KLK8O60259 260 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 RPP40O75818 363 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 LRATO95237 230 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 ACTL6AO96019 429 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 HIST1H2ABP04908 130 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 FGF1P05230 155 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 SNRNP70P08621 437 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 PRR35P0CG20 571 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 PRPS2P11908 318 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 DAOP14920 347 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 TACR3P29371 465 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 THBS4P35443 961 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 RAP1AP62834 184 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 SNTB2Q13425 540 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 ZDHHC20Q5W0Z9 365 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 PSAPL1Q6NUJ1 521 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 C16orf59Q7L2K0 433 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 HIST3H2AQ7L7L0 130 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 NKAIN3Q8N8D7 197 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 FBXO22Q8NEZ5 403 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 NUDT10Q8NFP7 164 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 OR13C3Q8NGS6 347 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 OR52J3Q8NH60 311 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 WFDC5Q8TCV5 224 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 PAQR8Q8TEZ7 354 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 HIST1H2ACQ93077 130 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 ALG14Q96F25 216 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 SLC22A12Q96S37 553 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 VPS25Q9BRG1 176 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 TDP1Q9NUW8 608 aa10.06□□□□□ -0.8
CLK3-226ENST00000569406 CARHSP1Q9Y2V2 147 aaKnown RBP10.06□□□□□ -0.8
CLK3-226ENST00000569406 ADAM10O14672 748 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 IMPA2O14732 288 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 KDELR3O43731 214 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 GALR3O60755 368 aaPredicted RBP10.05□□□□□ -0.8
CLK3-226ENST00000569406 AQP8O94778 261 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 IFNA17P01571 189 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 GIPP09681 153 aaPredicted RBP10.05□□□□□ -0.8
CLK3-226ENST00000569406 GKN3PP0CG01 181 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 FABP4P15090 132 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 MAGEB1P43366 347 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 PNLIPRP2P54317 469 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 BEX5Q5H9J7 111 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 PAQR3Q6TCH7 311 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 TTLL10Q6ZVT0 673 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 OR2W3Q7Z3T1 314 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 TECPR1Q7Z6L1 1165 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 FAM185AQ8N0U4 392 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 ZFP41Q8N8Y5 198 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 RHEBL1Q8TAI7 183 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 STAG3L4Q8TBR4 150 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 PXYLP1Q8TE99 480 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 PIH1D2Q8WWB5 315 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 OR2M4Q96R27 311 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 PBX4Q9BYU1 374 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 TRIM2Q9C040 744 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 GABARAPL1Q9H0R8 117 aa10.05□□□□□ -0.8
CLK3-226ENST00000569406 CLN6Q9NWW5 311 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms