RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ULK3Q6PHR2 472 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 LRFN4Q6PJG9 635 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 QSOX2Q6ZRP7 698 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 MAMDC2Q7Z304 686 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 GDF7Q7Z4P5 450 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 C9orf40Q8IXQ3 194 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM178AQ8NBL3 297 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PSD4Q8NDX1 1056 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 OR2T33Q8NG76 320 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 OR2AJ1Q8NGZ0 328 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 NRG4Q8WWG1 115 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 NKD1Q969G9 470 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TSSK2Q96PF2 358 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 NODALQ96S42 347 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SPSB2Q99619 263 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ZPBPQ9BS86 351 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SLC6A15Q9H2J7 730 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 OR52D1Q9H346 318 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SLC35A3Q9Y2D2 325 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PCDHGA8Q9Y5G5 932 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 FRYLO94915 3013 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 MN1Q10571 1320 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TNRC18O15417 2968 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZC3H12DA2A288 527 aaKnown RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TGFBR3LH3BV60 316 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 FAAHO00519 579 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ACOT8O14734 319 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ATXN7O15265 892 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SLC16A7O60669 478 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 IGHEP01854 428 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ATP1B1P05026 303 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CD63P08962 238 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ACP1P24666 158 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 EPHA2P29317 976 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ACVR1BP36896 505 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CRISP1P54107 249 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CASP6P55212 293 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CLDN17P56750 224 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SOX8P57073 446 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CARTPTQ16568 116 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF791Q3KP31 576 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 DDI2Q5TDH0 399 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 YOD1Q5VVQ6 348 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CDCP2Q5VXM1 449 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SLC35D2Q76EJ3 337 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TMPRSS12Q86WS5 348 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 UEVLDQ8IX04 471 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 MORN4Q8NDC4 146 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TSEN15Q8WW01 171 aaKnown RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 PRRC1Q96M27 445 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 Q96MT0 163 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TUBA1CQ9BQE3 449 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 POLR2J2Q9GZM3 115 aaKnown RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 KCNN2Q9H2S1 579 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SERHL2Q9H4I8 314 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ASIC5Q9NY37 505 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 GNG8Q9UK08 70 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZGRF1Q86YA3 2104 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 A0A087WUU8 490 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TEX13CA0A0J9YWL9 993 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 A0A1W2PR80 420 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 AGAP5A6NIR3 686 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 H0YC42 278 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 M0R082 166 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TOX3O15405 576 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 RGS10O43665 173 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 PPM1BO75688 479 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 GP1BAP07359 652 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 HYAL4Q2M3T9 481 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 WBP2NLQ6ICG8 309 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 BPHLQ86WA6 291 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 OR2L13Q8N349 312 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 GPR137CQ8N3F9 429 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 MEIOBQ8N635 442 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 OR7G1Q8NGA0 311 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF417Q8TAU3 575 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF671Q8TAW3 534 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 STON2Q8WXE9 905 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 DDIT4LQ96D03 193 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 RASD2Q96D21 266 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 Q96M85 177 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF681Q96N22 645 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF587Q96SQ5 575 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SECISBP2Q96T21 854 aaKnown RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TM9SF2Q99805 663 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SLC22A11Q9NSA0 550 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 PNPLA3Q9NST1 481 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CD300AQ9UGN4 299 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 MGAT4BQ9UQ53 548 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 A0A087WXM4 84 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF891A8MT65 544 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 F5H5K5 113 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 PYCARD-AS1I3L0S3 204 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TNFSF11O14788 317 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 OIP5O43482 229 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TMCC2O75069 709 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 MAP2K4P45985 399 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CSRP3P50461 194 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SLC37A1P57057 533 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CARD18P57730 90 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms