RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-229	ENST00000557348	GP1BA	P07359	652 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	GKN3P	P0CG01	181 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	NPIPA8	P0DM63	369 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	ADORA3	P0DMS8	318 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	BMP7	P18075	431 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	HTR2A	P28223	471 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	OR3A3	P47888	321 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	GZMK	P49863	264 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	FAP	Q12884	760 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	NKAIN1	Q4KMZ8	207 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	PLAG1	Q6DJT9	500 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	BMP8A	Q7Z5Y6	402 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	SHISA5	Q8N114	240 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	CELF2-AS1	Q8N7Q2	184 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	POGLUT1	Q8NBL1	392 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	OR1N1	Q8NGS0	311 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	TMEM255B	Q8WV15	326 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	CNOT9	Q92600	299 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	TSLP	Q969D9	159 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	FRMD6	Q96NE9	622 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	OR6C1	Q96RD1	312 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	SDHC	Q99643	169 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	TSSK6	Q9BXA6	273 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	SLC19A3	Q9BZV2	496 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	OR8D2	Q9GZM6	311 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	SMURF1	Q9HCE7	757 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	PAQR5	Q9NXK6	330 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	CNIH4	Q9P003	139 aa		11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
SHMT2-229	ENST00000557348	C2orf92	A0A1B0GVN3	265 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	PRODH	O43272	600 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	HYAL3	O43820	417 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	THY1	P04216	161 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	GAA	P10253	952 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	MYF5	P13349	255 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	TBXA2R	P21731	343 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	HOXD11	P31277	338 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	TNFSF8	P32971	234 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	CSTF2	P33240	577 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	GRK6	P43250	576 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	SLC6A8	P48029	635 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	HOXC5	Q00444	222 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	TAGLN	Q01995	201 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	KLHL26	Q53HC5	615 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ALG10B	Q5I7T1	473 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	RFPL4B	Q6ZWI9	263 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	NRARP	Q7Z6K4	114 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ZAR1	Q86SH2	424 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	TCEANC	Q8N8B7	351 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	TMEM105	Q8N8V8	129 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	FAM71C	Q8NEG0	241 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	OR4N2	Q8NGD1	307 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	OR9Q1	Q8NGQ5	310 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	METTL21A	Q8WXB1	218 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	CLIP3	Q96DZ5	547 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	TMEM80	Q96HE8	168 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	LRFN5	Q96NI6	719 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	IL4I1	Q96RQ9	567 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ZNF426	Q9BUY5	554 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	FN3K	Q9H479	309 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	SIDT1	Q9NXL6	827 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ING3	Q9NXR8	418 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	GPR83	Q9NYM4	423 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	AASS	Q9UDR5	926 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	C19orf25	Q9UFG5	118 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ZNF223	Q9UK11	482 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	NXT1	Q9UKK6	140 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	MUC3A	Q02505	3323 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348		A0A1B0GWA3	101 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348		A0A1W2PQD3	144 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348		D6RAR5	112 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ENTPD6	O75354	484 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	LYPD3	O95274	346 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	IL1A	P01583	271 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	HLA-DQB1	P01920	261 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	HEXB	P07686	556 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	STS	P08842	583 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ZGLP1	P0C6A0	271 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	PNMT	P11086	282 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	UBL4A	P11441	157 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	FGF5	P12034	268 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	PRG2	P13727	222 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	IL12B	P29460	328 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	GRK5	P34947	590 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	ACAA2	P42765	397 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	NUDT6	P53370	316 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	EFNB1	P98172	346 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	RAB40B	Q12829	278 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	BAMBI	Q13145	260 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	C1D	Q13901	141 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	EBP	Q15125	230 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	PGGHG	Q32M88	737 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	VWA2	Q5GFL6	755 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	SLC35F1	Q5T1Q4	408 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	C1orf189	Q5VU69	101 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	MZT2B	Q6NZ67	158 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	COX15	Q7KZN9	410 aa		11.62	□□□□□ -0.55
SHMT2-229	ENST00000557348	KIF18B	Q86Y91	864 aa		11.62	□□□□□ -0.55

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