RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ZFYVE1Q9HBF4 777 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 RHOFQ9HBH0 211 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ADARB2Q9NS39 739 aaKnown RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 THSD1Q9NS62 852 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 STARD10Q9Y365 291 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 PCDHB11Q9Y5F2 797 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 A0A0U1RQV5 110 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 C7orf77A4D0Y5 90 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 OR5H15A6NDH6 313 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 GGT3PA6NGU5 568 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 OR5H1A6NKK0 313 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 CDRT15L2A8MXV6 281 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 NARSO43776 548 aaKnown RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 PRAMEF12O95522 483 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 B3GALT4O96024 378 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 C1SP09871 688 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 CELP19835 753 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 TNFRSF1BP20333 461 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 IL2RGP31785 369 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 GEMP55040 296 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 SRSF11Q05519 484 aaKnown RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 RAB40BQ12829 278 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 PKDCCQ504Y2 493 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 GDPD4Q6W3E5 623 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 PRSS45Q7RTY3 260 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF283Q8N7M2 679 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 PIGXQ8TBF5 258 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 RNASE8Q8TDE3 154 aaKnown RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 CLEC4CQ8WTT0 213 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 RNF141Q8WVD5 230 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 NT5C3BQ969T7 300 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 AUNIPQ9H7T9 357 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 FAM120CQ9NX05 1096 aaKnown RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 OR14J1Q9UGF5 321 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 UBIAD1Q9Y5Z9 338 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 GSAPA4D1B5 854 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 MFNGO00587 321 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 SURF4O15260 269 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 SOCS5O75159 536 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 CLDN11O75508 207 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 RPP40O75818 363 aaKnown RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 RGS9O75916 674 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 NDUFB6O95139 128 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 OPN1LWP04000 364 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 RPLP1P05386 114 aaKnown RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 SLC35G4P0C7Q5 338 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 VSIG10L2P0DP72 767 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 SCNN1AP37088 669 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 CAV2P51636 162 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 HTRA3P83110 453 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 ACSM1Q08AH1 577 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 TMEM115Q12893 351 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 HMGN3Q15651 99 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 LINC00303Q3SY05 128 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 SLC36A1Q7Z2H8 476 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 CTU1Q7Z7A3 348 aaKnown RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 GID4Q8IVV7 300 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 NPWQ8N729 165 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 FBXO15Q8NCQ5 510 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 C16orf78Q8WTQ4 265 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 ING5Q8WYH8 240 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF582Q96NG8 517 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 FAM83CQ9BQN1 747 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 SAGE1Q9NXZ1 904 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 MARCH4Q9P2E8 410 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 TNFSF18Q9UNG2 199 aa12.81□□□□□ -0.36
SHMT2-226ENST00000556825 GPR55Q9Y2T6 319 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-226ENST00000556825 A0A087WUJ7 227 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 LNP1A1A4G5 178 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 PPP1R2P9O14990 202 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 TLX2O43763 284 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-226ENST00000556825 REM1O75628 298 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 RLN1P04808 185 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 LIMS3P0CW19 117 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 LIMS4P0CW20 117 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 RPIAP49247 311 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 TNFAIP1Q13829 316 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 DDX39BQ13838 428 aaKnown RBP12.8□□□□□ -0.36
SHMT2-226ENST00000556825 SYT14P1Q58G82 188 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 EOGTQ5NDL2 527 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 OLFML2AQ68BL7 652 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF770Q6IQ21 691 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-226ENST00000556825 LINGO4Q6UY18 593 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 CERS6Q6ZMG9 384 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 SLC16A14Q7RTX9 510 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 TIPARPQ7Z3E1 657 aaKnown RBP12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ADPRHL1Q8NDY3 354 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 OR1N1Q8NGS0 311 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 WRAP53Q9BUR4 548 aaKnown RBP12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ELOVL2Q9NXB9 296 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 KCND3Q9UK17 655 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ALPK3Q96L96 1907 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 OR52A4PA6NMU1 304 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF724A8MTY0 619 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 NDUFS8O00217 210 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 PGRMC2O15173 223 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 PCDH7O60245 1069 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 GGCTO75223 188 aaKnown RBP12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ADAP00813 363 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 LRG1P02750 347 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms