RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TRBV5-3A0A0A0MS03 114 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 A0A0G2JPF8 293 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 A0A1W2PPR1 153 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 TMEM247A6NEH6 219 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 CFAP73A6NFT4 308 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 HNRNPCL2B2RXH8 293 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 HNRNPCL3B7ZW38 293 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 CLIC1O00299 241 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 HNRNPCL1O60812 293 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 GCM2O75603 506 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 HNRNPCL4P0DMR1 293 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 LOXP28300 417 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 POLR2HP52434 150 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 SLC16A1P53985 500 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 SQLEQ14534 574 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 P2RY6Q15077 328 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 SLC2A7Q6PXP3 512 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 MTDHQ86UE4 582 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 ADGRG3Q86Y34 549 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 TUSC5Q8IXB3 177 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 OR52P1PQ8NH57 321 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 AURKBQ96GD4 344 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 ADAM19Q9H013 955 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 RABEP2Q9H5N1 569 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 CCM2LQ9NUG4 571 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 IFT52Q9Y366 437 aa14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 PRRC2AP48634 2157 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-209ENST00000554872 SULT2B1O00204 365 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 AP3D1O14617 1153 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 BCHEP06276 602 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 THBDP07204 575 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 FESP07332 822 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 RYKP34925 604 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 OR3A2P47893 321 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 IDH2P48735 452 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 H3F3AP84243 136 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 LARS2Q15031 903 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 EXOC3L2Q2M3D2 409 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 NUFIP2Q7Z417 695 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 MSRB3Q8IXL7 192 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 ATP6V1C2Q8NEY4 427 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 STEAP2Q8NFT2 490 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 ZHX1-C8orf76Q96EF9 292 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 TMEM19Q96HH6 336 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 SPATA9Q9BWV2 254 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 KLHL4Q9C0H6 718 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF385DQ9H6B1 395 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 SLC25A37Q9NYZ2 338 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 EMC3Q9P0I2 261 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 OSGIN1Q9UJX0 560 aa14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF443Q9Y2A4 671 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-209ENST00000554872 A0A1W2PP18 115 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 EDF1O60869 148 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 SASH3O75995 380 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ETS2P15036 469 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ACAA2P42765 397 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 NR1H2P55055 460 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 RASGEF1BQ0VAM2 473 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 BEX5Q5H9J7 111 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF836Q6ZNA1 936 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 Q6ZT83 130 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 C22orf34Q6ZV56 151 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 SSX8Q7RTT4 187 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF550Q7Z398 422 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 HMGN2P46Q86SG4 172 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 BBS10Q8TAM1 723 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 PIGXQ8TBF5 258 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 TSPEARQ8WU66 669 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 DDIT4LQ96D03 193 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ARL5BQ96KC2 179 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 PIP5K1AQ99755 562 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ACTR6Q9GZN1 396 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ARMC7Q9H6L4 198 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 CCDC167Q9P0B6 97 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 TMEM181Q9P2C4 612 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF232Q9UNY5 417 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 CORO2BQ9UQ03 480 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 PLEKHA6Q9Y2H5 1048 aa14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 MAP1AP78559 2803 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-209ENST00000554872 TMED7-TICAM2A0A0A6YYA0 188 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 IGHV3-15A0A0B4J1V0 119 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF716A6NP11 495 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 NR5A2O00482 541 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 GPR171O14626 319 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 KLF4O43474 513 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 EIF1BO60739 113 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 CD53P19397 219 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 COX5AP20674 150 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 DEFB113Q30KQ7 82 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 SFRP5Q5T4F7 317 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 METTL21CQ5VZV1 264 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 GALNT5Q7Z7M9 940 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 VRK2Q86Y07 508 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 POTEKPQ9BYX7 375 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 TMEM38AQ9H6F2 299 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 C12orf49Q9H741 205 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 CACYBPQ9HB71 228 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 MRGBPQ9NV56 204 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 RLIMQ9NVW2 624 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 BEX4Q9NWD9 120 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms