RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ZNF559Q9BR84 538 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 MS4A8Q9BY19 250 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 FXYD6Q9H0Q3 95 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 LRRN3Q9H3W5 708 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ANKRD19PQ9H560 264 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF768Q9H5H4 540 aaKnown RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 NOX3Q9HBY0 568 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PRDM9Q9NQV7 894 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 HPF1Q9NWY4 346 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF230Q9UIE0 474 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ERVK-19Q9WJR5 959 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 DENND4AQ7Z401 1863 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 TRAV27A0A087WT01 109 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 OR6C74A6NCV1 312 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PYCARD-AS1I3L0S3 204 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 BHLHE40O14503 412 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ERI3O43414 337 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 KCNAB3O43448 404 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 F12P00748 615 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 CLTBP09497 229 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 FPR3P25089 353 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PSMB10P40306 273 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PDX1P52945 283 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SEC13P55735 322 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PSMA6P60900 246 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SHC2P98077 582 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 CAMK1Q14012 370 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 DHCR24Q15392 516 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 GLDNQ6ZMI3 551 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 IKBIPQ70UQ0 350 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 FAM98AQ8NCA5 519 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 OR2T33Q8NG76 320 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 RELTQ969Z4 430 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 TEAD3Q99594 435 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ZDHHC5Q9C0B5 715 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 CHST6Q9GZX3 395 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 OR52D1Q9H346 318 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ADGRL4Q9HBW9 690 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 NEUROD4Q9HD90 331 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SLC6A20Q9NP91 592 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SLC35C2Q9NQQ7 365 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PCDHB16Q9NRJ7 776 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 H2AFY2Q9P0M6 372 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SLC23A2Q9UGH3 650 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 CYB5R1Q9UHQ9 305 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ST6GALNAC2Q9UJ37 374 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF346Q9UL40 294 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF175Q9Y473 711 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ATG4BQ9Y4P1 393 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 NPIPA5A0A0B4J1W7 369 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 IGKV1-8A0A0C4DH67 115 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 IRGMA1A4Y4 181 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 MEIS3P1A6NDR6 274 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ACOD1A6NK06 481 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 C4orf47A7E2U8 309 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 NPIPA7E9PJI5 369 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 AIPO00170 330 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 TGM6O95932 706 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ADH1CP00326 375 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 NPIPA8P0DM63 369 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF35P13682 527 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 NDUFV2P19404 249 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PAICSP22234 425 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 NTSP30990 170 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 S100A11P31949 105 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 RPL3P39023 403 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 MC3RP41968 323 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 CBX5P45973 191 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PTH2RP49190 550 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 NUBP1P53384 320 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SEC61A1P61619 476 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 DHODHQ02127 395 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 MESP2Q0VG99 397 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SGCGQ13326 291 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 KCNAB1Q14722 419 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 TRAM2Q15035 370 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 C2orf27AQ580R0 203 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PRPF38BQ5VTL8 546 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 DMKNQ6E0U4 476 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF613Q6PF04 617 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 MEPCEQ7L2J0 689 aaKnown RBP4.48□□□□□ -1.69
LIMA1-214ENST00000552783 FCRLAQ7L513 359 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 HDDC2Q7Z4H3 204 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 CLRN3Q8NCR9 226 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 OR13C2Q8NGS9 318 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 OR10G6Q8NH81 332 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PIGXQ8TBF5 258 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ZCCHC10Q8TBK6 192 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 ZDHHC1Q8WTX9 485 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 OSTF1Q92882 214 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 UBE2E3Q969T4 207 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SLC41A3Q96GZ6 507 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PPP1R16AQ96I34 528 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 FAM83CQ9BQN1 747 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PRSS27Q9BQR3 290 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 PBX4Q9BYU1 374 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 SCPEP1Q9HB40 452 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 TRIM36Q9NQ86 728 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 FBXO34Q9NWN3 711 aa4.48□□□□□ -1.69
LIMA1-214ENST00000552783 OPN4Q9UHM6 478 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms