RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 DNASE2O00115 360 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 KHNYNO15037 678 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 CHP2O43745 196 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 MPC2O95563 127 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 RLN2P04090 185 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SPI1P17947 270 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 MAP3K8P41279 467 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 CCR5P51681 352 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SOX8P57073 446 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 NUTF2P61970 127 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 MRPS21P82921 87 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 CRYZQ08257 329 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 COL28A1Q2UY09 1125 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 YOD1Q5VVQ6 348 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 KANSL1Q7Z3B3 1105 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 TRIM69Q86WT6 500 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ARRDC1Q8N5I2 433 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 LINC01555Q8NAE3 123 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF740Q8NDX6 193 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 C9orf43Q8TAL5 461 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SPACA9Q96E40 222 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF385AQ96PM9 386 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 RBP7Q96R05 134 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 INSM2Q96T92 566 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 NIPSNAP1Q9BPW8 284 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 APOOQ9BUR5 198 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 IFT27Q9BW83 186 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 HEXA-AS1Q9H8Q6 139 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 B3GAT2Q9NPZ5 323 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 PPP4R1LQ9P1A2 415 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ADAM30Q9UKF2 790 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC9A8Q9Y2E8 581 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 DYRK1BQ9Y463 629 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 IQCMA0A1B0GVH7 501 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 LRRTM2O43300 516 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 LATO43561 262 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 HPGDSO60760 199 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC43A1O75387 559 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 H2AFB1P0C5Y9 115 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 H2AFB2P0C5Z0 115 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ACP5P13686 325 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 KDELR2P33947 212 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 CRYBB2P43320 205 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ANXA11P50995 505 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 VSX2P58304 361 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SPHARQ15513 63 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 UAP1L1Q3KQV9 507 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 RNF212Q495C1 297 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SPIN4Q56A73 249 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 OR4F3Q6IEY1 312 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 TMIGD1Q6UXZ0 262 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 RBMS3Q6XE24 437 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 TIPARPQ7Z3E1 657 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SYT12Q8IV01 421 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 MS4A15Q8N5U1 240 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 OR5T1Q8NG75 326 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 OR10G2Q8NGC3 310 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 OR52E4Q8NGH9 312 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 C22orf15Q8WYQ4 148 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC25A46Q96AG3 418 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 C1GALT1C1Q96EU7 318 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 MAPKAP1Q9BPZ7 522 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 GSX2Q9BZM3 304 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ZFP64Q9NPA5 681 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 HCN3Q9P1Z3 774 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SEC14L4Q9UDX3 406 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 STUB1Q9UNE7 303 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 MAB21L2Q9Y586 359 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 LOC105369274A0A096LPK9 316 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC35F4A4IF30 521 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 RFXANKO14593 260 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SCG5P05408 212 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 HOXC4P09017 264 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 PSMB5P28074 263 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 TIA1P31483 386 aaKnown RBP eCLIP7.41□□□□□ -1.224e-7■■■■■ 27.1
PDLIM5-221ENST00000542407 CCR4P51679 360 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 XKP51811 444 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SUCLG1P53597 346 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 CDH12P55289 794 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 EGR3Q06889 387 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ACSM2AQ08AH3 577 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ABHD18Q0P651 414 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF528Q3MIS6 628 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 COL13A1Q5TAT6 717 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ACSM2BQ68CK6 577 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 PLAG1Q6DJT9 500 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 PAQR6Q6TCH4 344 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF621Q6ZSS3 439 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 OR4N4Q8N0Y3 316 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 C2orf73Q8N5S3 287 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 OR9Q2Q8NGE9 314 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 RPLP0P6Q8NHW5 317 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 RHOVQ96L33 236 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 SORCS2Q96PQ0 1159 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF559Q9BR84 538 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 TCEAL7Q9BRU2 100 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 MARVELD1Q9BSK0 173 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 FGF22Q9HCT0 170 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 EQTNQ9NQ60 294 aa7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 CLN6Q9NWW5 311 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms