RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 OR5B2Q96R09 309 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 PSD2Q9BQI7 771 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 SLC39A3Q9BRY0 314 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 SPATA9Q9BWV2 254 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 CLEC4MQ9H2X3 399 aaPredicted RBP12.64□□□□□ -0.39
USP28-209ENST00000540925 TMEM38AQ9H6F2 299 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 SERINC1Q9NRX5 453 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 OSGIN1Q9UJX0 560 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 TRIM33Q9UPN9 1127 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 HIVEP1P15822 2718 aa12.64□□□□□ -0.39
USP28-209ENST00000540925 AKAP6Q13023 2319 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 TMED7-TICAM2A0A0A6YYA0 188 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 IGHV3-15A0A0B4J1V0 119 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 A0A0G2JND7 137 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 A0A1W2PPR1 153 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 C16orf97H3BN30 126 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 ZNF208O43345 1280 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 DNPH1O43598 174 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 PRKD3O94806 890 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 PGM3O95394 542 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 PMS2P2O95744 297 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 PLGP00747 810 aaPredicted RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 GKN3PP0CG01 181 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 PRG2P13727 222 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 POU2F1P14859 743 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 ETS2P15036 469 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 NCF2P19878 526 aaPredicted RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 DNAJA1P31689 397 aaKnown RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 POLR2HP52434 150 aaKnown RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 MAP2K6P52564 334 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 CTBP2P56545 445 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 H3F3AP84243 136 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 RUNDC3AQ59EK9 446 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 PPP4R4Q6NUP7 873 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 TFAP2EQ6VUC0 442 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 NUFIP2Q7Z417 695 aaKnown RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 TUSC5Q8IXB3 177 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 ZNF563Q8TA94 476 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 BBS10Q8TAM1 723 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 SLC35B4Q969S0 331 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 TMEM120AQ9BXJ8 343 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 POLDIP3Q9BY77 421 aaKnown RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 OR11A1Q9GZK7 315 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 PLEKHF2Q9H8W4 249 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 FGFR1OP2Q9NVK5 253 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 LEF1Q9UJU2 399 aaPredicted RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 TMED7Q9Y3B3 224 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 HDGFL3Q9Y3E1 203 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 SPIN1Q9Y657 262 aaPredicted RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 MTORP42345 2549 aa12.63□□□□□ -0.39
USP28-209ENST00000540925 MAP1AP78559 2803 aaPredicted RBP12.63□□□□□ -0.39
USP28-209ENST00000540925 FREM1Q5H8C1 2179 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 IGKV3D-15A0A087WSY6 115 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 TMEM72A0PK05 275 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 ZNF724A8MTY0 619 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 DEFB108AA8MXU0 73 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 GCM2O75603 506 aaPredicted RBP12.62□□□□□ -0.39
USP28-209ENST00000540925 FESP07332 822 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 YES1P07947 543 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 LOXP28300 417 aaPredicted RBP12.62□□□□□ -0.39
USP28-209ENST00000540925 TACR3P29371 465 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 CSNK2A1P68400 391 aaPredicted RBP12.62□□□□□ -0.39
USP28-209ENST00000540925 LARS2Q15031 903 aaKnown RBP12.62□□□□□ -0.39
USP28-209ENST00000540925 PDK3Q15120 406 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 GCNT6Q5T4J0 391 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 MTDHQ86UE4 582 aaKnown RBP12.62□□□□□ -0.39
USP28-209ENST00000540925 COMTD1Q86VU5 262 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 GABRG1Q8N1C3 465 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 REXO5Q96IC2 774 aaKnown RBP12.62□□□□□ -0.39
USP28-209ENST00000540925 ANKRD27Q96NW4 1050 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 TACO1Q9BSH4 297 aaKnown RBP12.62□□□□□ -0.39
USP28-209ENST00000540925 OR10A4Q9H209 315 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 LIME1Q9H400 295 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 MED4Q9NPJ6 270 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 KLHL9Q9P2J3 617 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 NDRG3Q9UGV2 375 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 TRAPPC4Q9Y296 219 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 IFT52Q9Y366 437 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 NDUFAF1Q9Y375 327 aa12.62□□□□□ -0.39
USP28-209ENST00000540925 ZC3H12DA2A288 527 aaKnown RBP12.61□□□□□ -0.39
USP28-209ENST00000540925 TMEM247A6NEH6 219 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 ZNF716A6NP11 495 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 ZNF814B7Z6K7 855 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 SULT2B1O00204 365 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 THBDP07204 575 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 IMPDH2P12268 514 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 PSMB1P20618 241 aaKnown RBP12.61□□□□□ -0.39
USP28-209ENST00000540925 CRYGSP22914 178 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 EDNRAP25101 427 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 PRKAR1BP31321 381 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 SLC16A1P53985 500 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 CDK6Q00534 326 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 GUCY1A3Q02108 690 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 ZNF311Q5JNZ3 666 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 REEP3Q6NUK4 255 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 BEND4Q6ZU67 534 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 DHDDSQ86SQ9 333 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 SERPINA11Q86U17 422 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 PTOV1Q86YD1 416 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 NFKBIDQ8NI38 313 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms