RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 COX6A1P12074 109 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 HLA-DOBP13765 273 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 NR1D1P20393 614 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ITGA3P26006 1051 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 CCNG1P51959 295 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 MTTPP55157 894 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 CDH13P55290 713 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 HERVK_113P63132 956 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 PHEXP78562 749 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 EEF1A2Q05639 463 aaKnown RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 DDX39BQ13838 428 aaKnown RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 RCN2Q14257 317 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ABRAXAS2Q15018 415 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 NSDHLQ15738 373 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 KRTCAP3Q53RY4 240 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 KHDRBS2Q5VWX1 349 aaKnown RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 TMEM205Q6UW68 189 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 SH2D5Q6ZV89 423 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 TMEM219Q86XT9 240 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 SLC22A9Q8IVM8 553 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ODF3L1Q8IXM7 274 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 RIBC1Q8N443 379 aaPredicted RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 L3MBTL4Q8NA19 623 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 OR52B6Q8NGF0 335 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 FIG4Q92562 907 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 QRFPRQ96P65 431 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 SERINC2Q96SA4 455 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 CENPKQ9BS16 269 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 TBCDQ9BTW9 1192 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 NUDT9Q9BW91 350 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ERVK-6Q9BXR3 956 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 MS4A8Q9BY19 250 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ROPN1BQ9BZX4 212 aaPredicted RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ROGDIQ9GZN7 287 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 OR51B5Q9H339 312 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 COPS7BQ9H9Q2 264 aaPredicted RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ROPN1Q9HAT0 212 aaPredicted RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 C19orf25Q9UFG5 118 aaPredicted RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 FBXL2Q9UKC9 423 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 GRID1Q9ULK0 1009 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 AMDHD2Q9Y303 409 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 RNF11Q9Y3C5 154 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 IGHV1-45A0A0A0MS14 117 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 IGHV3-20A0A0C4DH32 117 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 A0A1B0GUV1 79 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 A0A1W2PQ72 361 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 hCG_1807616A0A1W2PRN6 198 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 MAGEB17A8MXT2 336 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 FOXE1O00358 373 aaPredicted RBP6.27□□□□□ -1.41
SDCBP-208ENST00000520228 CLDN4O14493 209 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 SUPT7LO94864 414 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 SERPINA7P05543 415 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 MYL2P10916 166 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ICAM2P13598 275 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 CPA3P15088 417 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 MYOD1P15172 320 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 TSPAN8P19075 237 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 IMPDH1P20839 514 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ATP5A1P25705 553 aaKnown RBP6.27□□□□□ -1.41
SDCBP-208ENST00000520228 SSR2P43308 183 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 RAP1GDS1P52306 607 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 EFNA3P52797 238 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 OR4D2P58180 307 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 BTG2P78543 158 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ACTN3Q08043 901 aaPredicted RBP6.27□□□□□ -1.41
SDCBP-208ENST00000520228 KLRB1Q12918 225 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 EPS8Q12929 822 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 IFT88Q13099 833 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 CCDC153Q494R4 210 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 UNC50Q53HI1 259 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ZNF678Q5SXM1 525 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 AGAP7PQ5VUJ5 663 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 TTC19Q6DKK2 380 aaPredicted RBP6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ZYG11AQ6WRX3 759 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 LANCL3Q6ZV70 420 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 RPS27LQ71UM5 84 aaKnown RBP6.27□□□□□ -1.41
SDCBP-208ENST00000520228 CPEB2Q7Z5Q1 589 aaKnown RBP6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ANKRD37Q7Z713 158 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 HPS6Q86YV9 775 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 RNF113BQ8IZP6 322 aaKnown RBP6.27□□□□□ -1.41
SDCBP-208ENST00000520228 C4orf33Q8N1A6 199 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 CA13Q8N1Q1 262 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 RNF175Q8N4F7 328 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 MREGQ8N565 214 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 CCNYL1Q8N7R7 359 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ACOT4Q8N9L9 421 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 PLPP5Q8NEB5 264 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 OR4F6Q8NGB9 312 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 TM9SF4Q92544 642 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 PIGTQ969N2 578 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 CCDC126Q96EE4 140 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 AGAP4Q96P64 663 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 DUX5Q96PT3 197 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 NTMT1Q9BV86 223 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 ELOVL6Q9H5J4 265 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 PSD3Q9NYI0 1048 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 C5AR2Q9P296 337 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 MALT1Q9UDY8 824 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 LGALS13Q9UHV8 139 aa6.27□□□□□ -1.41
SDCBP-208ENST00000520228 EMCNQ9ULC0 261 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms