RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CCDC106Q9BWC9 280 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 KLHL4Q9C0H6 718 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 CXXC4Q9H2H0 198 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 TPT1P8Q9HAU6 139 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 TIGARQ9NQ88 270 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 CTPS2Q9NRF8 586 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 KLHL28Q9NXS3 571 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 ING1Q9UK53 422 aaPredicted RBP8.33□□□□□ -1.08
HDAC3-215ENST00000519474 SLC35A3Q9Y2D2 325 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 PLEKHA6Q9Y2H5 1048 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 TESMINQ9Y4I5 508 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 PCDHB14Q9Y5E9 798 aa8.33□□□□□ -1.08
HDAC3-215ENST00000519474 ABCA12Q86UK0 2595 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 IGHV3-15A0A0B4J1V0 119 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 FAM234BA2RU67 622 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 GJE1A6NN92 205 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 PRSS47A8MTI9 375 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 KLF4O43474 513 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 KRT75O95678 551 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 PLGP00747 810 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 THBDP07204 575 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 YES1P07947 543 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 PABPC4LP0CB38 370 aaKnown RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 NR2F1P10589 423 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ETFAP13804 333 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 RAC2P15153 192 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 H2AFXP16104 143 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 RPS4Y1P22090 263 aaKnown RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 CRYGSP22914 178 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 LOXP28300 417 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 AGTR1P30556 359 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 CCKARP32238 428 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 APOBEC1P41238 236 aaKnown RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 RANBP1P43487 201 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 KCNJ5P48544 419 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 IDH2P48735 452 aaKnown RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 CCR4P51679 360 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 TXNL4AP83876 142 aaKnown RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 MERTKQ12866 999 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 SELENBP1Q13228 472 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 POU4F3Q15319 338 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 EXOC3L2Q2M3D2 409 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ANKRD39Q53RE8 183 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 BEND4Q6ZU67 534 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 FCRLAQ7L513 359 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 HDXQ7Z353 690 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 LSRQ86X29 649 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 MIER2Q8N344 545 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 SLC43A2Q8N370 569 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ARFGAP2Q8N6H7 521 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 TMCO5AQ8N6Q1 288 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 LRRC8CQ8TDW0 803 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 RNF128Q8TEB7 428 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 TMEM234Q8WY98 164 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF775Q96BV0 537 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 AURKBQ96GD4 344 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ITCHQ96J02 903 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ARL5BQ96KC2 179 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 FOXC2Q99958 501 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 CCDC28BQ9BUN5 200 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 RSPO3Q9BXY4 272 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ADAM19Q9H013 955 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 PAIP1Q9H074 479 aaKnown RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 C12orf49Q9H741 205 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 EXOSC3Q9NQT5 275 aaKnown RBP8.32□□□□□ -1.08
HDAC3-215ENST00000519474 SERINC1Q9NRX5 453 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 SLAMF8Q9P0V8 285 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 EMC9Q9Y3B6 208 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 CHST2Q9Y4C5 530 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 SPG11Q96JI7 2443 aa8.32□□□□□ -1.08
HDAC3-215ENST00000519474 ABCA4P78363 2273 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF814B7Z6K7 855 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 CLIC1O00299 241 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 AP3D1O14617 1153 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 CYTIPO60759 359 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 GCM2O75603 506 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-215ENST00000519474 ANP32DO95626 131 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 IL7RP16871 459 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 HOXB9P17482 250 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-215ENST00000519474 DNASE1P24855 282 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 NTF4P34130 210 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 ACAA2P42765 397 aaKnown RBP8.31□□□□□ -1.08
HDAC3-215ENST00000519474 CRATP43155 626 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 PPP2R2AP63151 447 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 TUBA4AP68366 448 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 RNPS1Q15287 305 aaKnown RBP8.31□□□□□ -1.08
HDAC3-215ENST00000519474 RGNQ15493 299 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 PAGE3Q5JUK9 113 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 TMEM201Q5SNT2 666 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 FBXW10Q5XX13 1052 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 SLC2A7Q6PXP3 512 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 BLOC1S3Q6QNY0 202 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 MSANTD1Q6ZTZ1 278 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 MTDHQ86UE4 582 aaKnown RBP8.31□□□□□ -1.08
HDAC3-215ENST00000519474 VRK2Q86Y07 508 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 CMIPQ8IY22 773 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 CLIP4Q8N3C7 705 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF563Q8TA94 476 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 SLC38A5Q8WUX1 472 aa8.31□□□□□ -1.08
HDAC3-215ENST00000519474 CKAP2Q8WWK9 683 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms