RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PON3Q15166 354 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF385CQ66K41 422 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 GFRALQ6UXV0 394 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 MED25Q71SY5 747 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 UBE3DQ7Z6J8 389 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 KRTCAP2Q8N6L1 136 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 MRPL48Q96GC5 212 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 C14orf119Q9NWQ9 140 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 ZDHHC2Q9UIJ5 367 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 KLK4Q9Y5K2 254 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 CSMD1Q96PZ7 3565 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 A0A0G2JMP0 313 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 SOCS6O14544 535 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 AZIN1O14977 448 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 CCNB2O95067 398 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 RLN2P04090 185 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 HRGP04196 525 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 QDPRP09417 244 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ABOP16442 354 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 CD96P40200 585 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 TEKQ02763 1124 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 FRG1Q14331 258 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 TMEM198Q66K66 360 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ULK3Q6PHR2 472 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC5A8Q8N695 610 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 S100ZQ8WXG8 99 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 MAFIPQ8WZ33 124 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 REPS1Q96D71 796 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 KCNS3Q9BQ31 491 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 C12orf49Q9H741 205 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF696Q9H7X3 374 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PELI2Q9HAT8 420 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PRDM9Q9NQV7 894 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PRDM7Q9NQW5 492 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 AHSPQ9NZD4 102 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 RAB26Q9ULW5 256 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 NTNG1Q9Y2I2 539 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 SONP18583 2426 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 TEX15Q9BXT5 2789 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 VSTM5A8MXK1 200 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 G3V2L1 256 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 LGALS8O00214 317 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 TBX6O95947 436 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 IMPDH1P20839 514 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 AHRP35869 848 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 CASRP41180 1078 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 SOX3P41225 446 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 WDR4P57081 412 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF155Q12901 538 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF169Q14929 603 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PCLAFQ15004 111 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ATP6AP1Q15904 470 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 DGUOKQ16854 277 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 RFTN2Q52LD8 501 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 GRHL2Q6ISB3 625 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 FIGNL1Q6PIW4 674 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 LRFN4Q6PJG9 635 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC43A2Q8N370 569 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 TWIST2Q8WVJ9 160 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 TXNDC15Q96J42 360 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 UCN2Q96RP3 112 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ADOQ96SZ5 270 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 KLRF1Q9NZS2 232 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ABI3Q9P2A4 366 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ACSL6Q9UKU0 697 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 GTF2A1LQ9UNN4 478 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PLLPQ9Y342 182 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PEX16Q9Y5Y5 336 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ANKHD1Q8IWZ3 2542 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PRAMEF2O60811 474 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 ZG16O60844 167 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 CLEC3AO75596 197 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 CT62P0C5K7 136 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 CYB561P49447 251 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 P2RY4P51582 365 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 MANFP55145 182 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC26A5P58743 744 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 RAC1P63000 192 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 KLRB1Q12918 225 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 HABP2Q14520 560 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 CCNJQ5T5M9 372 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 AGAP6Q5VW22 663 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 LIPMQ5VYY2 423 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC16A12Q6ZSM3 486 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 OR4K14Q8NGD5 310 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 OR6S1Q8NH40 331 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 MCFD2Q8NI22 146 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 C10orf82Q8WW14 230 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 TMEM41AQ96HV5 264 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 DOHHQ9BU89 302 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 MANSC1Q9H8J5 431 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 COQ10BQ9H8M1 238 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 POPDC3Q9HBV1 291 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 GALNT9Q9HCQ5 603 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 OLAHQ9NV23 265 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PPP1R14DQ9NXH3 145 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 PSME2Q9UL46 239 aa7.26□□□□□ -1.25
LIMCH1-219ENST00000514096 FOXE1O00358 373 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 ITGB2P05107 769 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 BMP2P12643 396 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms