RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 URADA6NGE7 173 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SMLR1H3BR10 107 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CYR61O00622 381 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 BRINP1O60477 761 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CPNE3O75131 537 aaKnown RBP14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 NT5EP21589 574 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 EVI2BP34910 448 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 BTCP35070 178 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ACTR1BP42025 376 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ACTR1AP61163 376 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 UBXN2BQ14CS0 331 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SLC25A35Q3KQZ1 300 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TMEM31Q5JXX7 168 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 LAMTOR1Q6IAA8 161 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ASB18Q6ZVZ8 466 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SSX6Q7RTT6 188 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 BMP8AQ7Z5Y6 402 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TPRA1Q86W33 373 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CYB561A3Q8NBI2 242 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR5T3Q8NGG3 340 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FAM3CQ92520 227 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 RFT1Q96AA3 541 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ABHD1Q96SE0 405 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TRAF4Q9BUZ4 470 aaPredicted RBP14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TMEM168Q9H0V1 697 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FLRT3Q9NZU0 649 aa14.84□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 H0YGG7 62 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 J3QLW9 94 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ADAM11O75078 769 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF780AO75290 641 aaPredicted RBP14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PPP1R3DO95685 299 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SAGP10523 405 aaPredicted RBP14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF19P17023 458 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 DRD5P21918 477 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 AHCYP23526 432 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RBMS1P29558 406 aaKnown RBP14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GABRA3P34903 492 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TNFRSF4P43489 277 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 LSSP48449 732 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SLC16A1P53985 500 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ATP12AP54707 1039 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RAB25P57735 213 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ARF3P61204 181 aaPredicted RBP14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BTG1P62324 171 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NFATC4Q14934 902 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 DMKNQ6E0U4 476 aaPredicted RBP14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ABHD13Q7L211 337 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PLCZ1Q86YW0 608 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GPALPP1Q8IXQ4 340 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CDK20Q8IZL9 346 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 FAM109AQ8N4B1 249 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BMPERQ8N8U9 685 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CAMKVQ8NCB2 501 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR5J2Q8NH18 312 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SMPDL3BQ92485 455 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CNOT9Q92600 299 aaKnown RBP14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PEX11GQ96HA9 241 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 MAP6Q96JE9 813 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BMFQ96LC9 184 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CD93Q9NPY3 652 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 EVA1BQ9NVM1 165 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ING3Q9NXR8 418 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ACTR10Q9NZ32 417 aa14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 USP36Q9P275 1121 aaKnown RBP14.83□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A0B4J2E0 115 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A1B0GX12 115 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQF6 199 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR6C74A6NCV1 312 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR5K3A6NET4 321 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SLC9B1P1A6NJY1 282 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 AKR7A2O43488 359 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GPR75O95800 540 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HK1P19367 917 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ACVR1BP36896 505 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PITPNBP48739 271 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TRAM1Q15629 374 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZCCHC12Q6PEW1 402 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF613Q6PF04 617 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR10G6Q8NH81 332 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GRHL3Q8TE85 626 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TNFRSF13CQ96RJ3 184 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GABRG3Q99928 467 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 UQCC2Q9BRT2 126 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GTPBP2Q9BX10 602 aaKnown RBP14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 FOLH1BQ9HBA9 442 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HAO2Q9NYQ3 351 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RIIAD1A6NNX1 92 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ERVH48-1M5A8F1 160 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SOX30O94993 753 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GYPBP06028 91 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NGFRP08138 427 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PVRP15151 417 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NTSR1P30989 418 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 POU6F2P78424 691 aaPredicted RBP14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 DGAT2L6Q6ZPD8 337 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RFLNBQ8N5W9 214 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR13C5Q8NGS8 318 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RPLP0P6Q8NHW5 317 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TRMT10AQ8TBZ6 339 aaKnown RBP14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ASB12Q8WXK4 309 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms