RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 FAAHO00519 579 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 SIAH2O43255 324 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 PRG2P13727 222 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 TACR3P29371 465 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 SF3A3Q12874 501 aaKnown RBP eCLIP21.96■■□□□ 1.11
UPF3A-209ENST00000492270 RNF220Q5VTB9 566 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 STAC2Q6ZMT1 411 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 ZC3HAV1LQ96H79 300 aaKnown RBP21.96■■□□□ 1.11
UPF3A-209ENST00000492270 ZNF300Q96RE9 604 aaPredicted RBP21.96■■□□□ 1.11
UPF3A-209ENST00000492270 SIKE1Q9BRV8 207 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 TMEM120AQ9BXJ8 343 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 RABEP2Q9H5N1 569 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 C6orf203Q9P0P8 240 aaPredicted RBP21.96■■□□□ 1.11
UPF3A-209ENST00000492270 TMED7Q9Y3B3 224 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 CASKO14936 926 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 CYTIPO60759 359 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 THBS1P07996 1170 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 ARAFP10398 606 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 ACAA2P42765 397 aaKnown RBP21.95■■□□□ 1.1
UPF3A-209ENST00000492270 SLC1A3P43003 542 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 POLR2HP52434 150 aaKnown RBP21.95■■□□□ 1.1
UPF3A-209ENST00000492270 RASGEF1BQ0VAM2 473 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 CGB2Q6NT52 195 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 DLEU7Q6UYE1 221 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 TFAP2EQ6VUC0 442 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 RETREG3Q86VR2 466 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 SLC43A2Q8N370 569 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 NFKBIDQ8NI38 313 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 ZNF775Q96BV0 537 aaPredicted RBP21.95■■□□□ 1.1
UPF3A-209ENST00000492270 RSPO3Q9BXY4 272 aaPredicted RBP21.95■■□□□ 1.1
UPF3A-209ENST00000492270 BCL2L10Q9HD36 194 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 FGFR1OP2Q9NVK5 253 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 NIPSNAP3AQ9UFN0 247 aaPredicted RBP21.95■■□□□ 1.1
UPF3A-209ENST00000492270 TRIM33Q9UPN9 1127 aa21.95■■□□□ 1.1
UPF3A-209ENST00000492270 C5orf58C9J3I9 102 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 PGM3O95394 542 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 YES1P07947 543 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 HTR3AP46098 478 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 CSNK2A1P68400 391 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-209ENST00000492270 LARS2Q15031 903 aaKnown RBP21.94■■□□□ 1.1
UPF3A-209ENST00000492270 ZNF311Q5JNZ3 666 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 GCNT6Q5T4J0 391 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 BEND4Q6ZU67 534 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 ZC3HAV1Q7Z2W4 902 aaKnown RBP21.94■■□□□ 1.1
UPF3A-209ENST00000492270 STK32CQ86UX6 486 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 ZNF440Q8IYI8 595 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 BBS10Q8TAM1 723 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 CPPED1Q9BRF8 314 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-209ENST00000492270 SPATA9Q9BWV2 254 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 BCO1Q9HAY6 547 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 GP6Q9HCN6 339 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 KLHL9Q9P2J3 617 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 ST6GALNAC2Q9UJ37 374 aa21.94■■□□□ 1.1
UPF3A-209ENST00000492270 LEF1Q9UJU2 399 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-209ENST00000492270 ZC3H12DA2A288 527 aaKnown RBP21.93■■□□□ 1.1
UPF3A-209ENST00000492270 FRS3O43559 492 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 GOSR1O95249 250 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 UQCRBP14927 111 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 PPIBP23284 216 aaKnown RBP21.93■■□□□ 1.1
UPF3A-209ENST00000492270 EDNRAP25101 427 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 IST1P53990 364 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 GUCY1A3Q02108 690 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 TESK1Q15569 626 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 PRAMEF8Q5VWM4 474 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 PRAMEF7Q5VXH5 474 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 ABLIM2Q6H8Q1 611 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 DHDDSQ86SQ9 333 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 SERPINA11Q86U17 422 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 CADM2Q8N3J6 435 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 ADAM19Q9H013 955 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 PLEKHA6Q9Y2H5 1048 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 HDGFL3Q9Y3E1 203 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 GMEB1Q9Y692 573 aa21.93■■□□□ 1.1
UPF3A-209ENST00000492270 DEFB108AA8MXU0 73 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 ZNF814B7Z6K7 855 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 GCM2O75603 506 aaPredicted RBP21.92■■□□□ 1.1
UPF3A-209ENST00000492270 PMS2P2O95744 297 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 THBDP07204 575 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 GPX2P18283 190 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 CRYGSP22914 178 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 SELPLGQ14242 412 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 RUNDC3AQ59EK9 446 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 MTDHQ86UE4 582 aaKnown RBP21.92■■□□□ 1.1
UPF3A-209ENST00000492270 CXorf67Q86X51 503 aaPredicted RBP21.92■■□□□ 1.1
UPF3A-209ENST00000492270 PLEKHF2Q9H8W4 249 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 CACYBPQ9HB71 228 aaKnown RBP21.92■■□□□ 1.1
UPF3A-209ENST00000492270 ZNF226Q9NYT6 803 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 ZNF232Q9UNY5 417 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 IFT52Q9Y366 437 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 NDUFAF1Q9Y375 327 aa21.92■■□□□ 1.1
UPF3A-209ENST00000492270 RAI1Q7Z5J4 1906 aaPredicted RBP21.91■■□□□ 1.1
UPF3A-209ENST00000492270 ANGPT2O15123 496 aa21.91■■□□□ 1.1
UPF3A-209ENST00000492270 ZNF208O43345 1280 aa21.91■■□□□ 1.1
UPF3A-209ENST00000492270 RAMP1O60894 148 aa21.91■■□□□ 1.1
UPF3A-209ENST00000492270 IMPDH2P12268 514 aa21.91■■□□□ 1.1
UPF3A-209ENST00000492270 CLK1P49759 484 aaKnown RBP21.91■■□□□ 1.1
UPF3A-209ENST00000492270 OR2B6P58173 313 aa21.91■■□□□ 1.1
UPF3A-209ENST00000492270 HOXC5Q00444 222 aa21.91■■□□□ 1.1
UPF3A-209ENST00000492270 CDK6Q00534 326 aa21.91■■□□□ 1.1
UPF3A-209ENST00000492270 TSC22D1Q15714 1073 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms