RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SELENBP1Q13228 472 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.05□□□□□ -0.64
SDC1-206ENST00000482879 KRTCAP3Q53RY4 240 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 ZNF605Q86T29 641 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 LSRQ86X29 649 aaPredicted RBP11.05□□□□□ -0.64
SDC1-206ENST00000482879 NKAIN4Q8IVV8 208 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 NBEAQ8NFP9 2946 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 OR52J3Q8NH60 311 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 SMPDL3BQ92485 455 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 ABTB1Q969K4 478 aaPredicted RBP11.05□□□□□ -0.64
SDC1-206ENST00000482879 MPP4Q96JB8 637 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 DHRS1Q96LJ7 313 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 GPR137Q96N19 417 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 PRSS27Q9BQR3 290 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 ASF1BQ9NVP2 202 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 DNAJB9Q9UBS3 223 aa11.05□□□□□ -0.64
SDC1-206ENST00000482879 SPIN1Q9Y657 262 aaPredicted RBP11.05□□□□□ -0.64
SDC1-206ENST00000482879 A0A1B0GVC2 190 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 A0A1W2PRQ8 180 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 H3BNX3 289 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 TNFRSF11BO00300 401 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 CLOCKO15516 846 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 DEAF1O75398 565 aaPredicted RBP11.04□□□□□ -0.64
SDC1-206ENST00000482879 KRT36O76013 467 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 ACTL6AO96019 429 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 LDLRP01130 860 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 TFPIP10646 304 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 FCGR1AP12314 374 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 BMP7P18075 431 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 POU3F2P20265 443 aaPredicted RBP11.04□□□□□ -0.64
SDC1-206ENST00000482879 MAP2K6P52564 334 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 RAC1P63000 192 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 DGCR6Q14129 220 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 TMEM176BQ3YBM2 270 aaPredicted RBP11.04□□□□□ -0.64
SDC1-206ENST00000482879 FGD3Q5JSP0 725 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 C3orf33Q6P1S2 294 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 TTC33Q6PID6 262 aaPredicted RBP11.04□□□□□ -0.64
SDC1-206ENST00000482879 LINC00114Q6XXX2 140 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 WDR88Q6ZMY6 472 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 AMIGO2Q86SJ2 522 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 LILRA2Q8N149 483 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 GHDCQ8N2G8 530 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 LRTOMTQ8WZ04 291 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 RELTQ969Z4 430 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 HS6ST2Q96MM7 605 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 ANKRD19PQ9H560 264 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 TMEM185BQ9H7F4 350 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 REEP1Q9H902 201 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 PLSCR2Q9NRY7 297 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 MAN2C1Q9NTJ4 1040 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 VNN3Q9NY84 501 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 STOML1Q9UBI4 398 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 RRP15Q9Y3B9 282 aaKnown RBP11.04□□□□□ -0.64
SDC1-206ENST00000482879 SAMHD1Q9Y3Z3 626 aaKnown RBP11.04□□□□□ -0.64
SDC1-206ENST00000482879 AP4B1Q9Y6B7 739 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 KIAA1549Q9HCM3 1950 aa11.04□□□□□ -0.64
SDC1-206ENST00000482879 NBASA2RRP1 2371 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 TRBV4-1A0A0J9YWV2 114 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 A0A1B0GTH9 108 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 GJE1A6NN92 205 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 A8MVM7 634 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 AQP7O14520 342 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 ZNF208O43345 1280 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 BAG2O95816 211 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 PTNP21246 168 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 FKBP2P26885 142 aaKnown RBP11.03□□□□□ -0.64
SDC1-206ENST00000482879 SFTPDP35247 375 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 RBM34P42696 430 aaKnown RBP11.03□□□□□ -0.64
SDC1-206ENST00000482879 HMGA2P52926 109 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 MLLT10P55197 1068 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 HSF1Q00613 529 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 PPP1R8Q12972 351 aaKnown RBP11.03□□□□□ -0.64
SDC1-206ENST00000482879 ATP6AP1Q15904 470 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 NHSL2Q5HYW2 709 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 DCST1Q5T197 706 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 VASNQ6EMK4 673 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 ARHGAP11AQ6P4F7 1023 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 PODNL1Q6PEZ8 512 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 TBPL2Q6SJ96 375 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 ZNF730Q6ZMV8 503 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 RRM2BQ7LG56 351 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 P3H2Q8IVL5 708 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 CPT1CQ8TCG5 803 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 SLC7A13Q8TCU3 470 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 STK35Q8TDR2 534 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 SLC25A43Q8WUT9 341 aaPredicted RBP11.03□□□□□ -0.64
SDC1-206ENST00000482879 TMEM255BQ8WV15 326 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 TMEM239Q8WW34 195 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 DDIT4LQ96D03 193 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 ALPK1Q96QP1 1244 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 BARD1Q99728 777 aaKnown RBP11.03□□□□□ -0.64
SDC1-206ENST00000482879 TMEM43Q9BTV4 400 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 BDH2Q9BUT1 245 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 OR11A1Q9GZK7 315 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 SPRR3Q9UBC9 169 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 TNFRSF10DQ9UBN6 386 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 TMCC3Q9ULS5 477 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 LYVE1Q9Y5Y7 322 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 U3KQV3 271 aa11.03□□□□□ -0.64
SDC1-206ENST00000482879 KMT2BQ9UMN6 2715 aaPredicted RBP11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms