RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 ZNF232Q9UNY5 417 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 GMEB1Q9Y692 573 aa13.05□□□□□ -0.32
USP39-206ENST00000448971 JMJD1CQ15652 2540 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 NSD1Q96L73 2696 aaPredicted RBP13.04□□□□□ -0.32
USP39-206ENST00000448971 A0A1W2PNR3 127 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 FBP2O00757 339 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 ADAMDEC1O15204 470 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 ADAM11O75078 769 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 AQP8O94778 261 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 PGM3O95394 542 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 CRHP06850 196 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 GKN3PP0CG01 181 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 TFPIP10646 304 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 SLC6A2P23975 617 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 AQP1P29972 269 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 APOBEC1P41238 236 aaKnown RBP13.04□□□□□ -0.32
USP39-206ENST00000448971 SEC24CP53992 1094 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 CARD18P57730 90 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 GNGT1P63211 74 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 EEF1A1P68104 462 aaKnown RBP13.04□□□□□ -0.32
USP39-206ENST00000448971 EPS8Q12929 822 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 SELPLGQ14242 412 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 ZNF239Q16600 458 aaKnown RBP13.04□□□□□ -0.32
USP39-206ENST00000448971 SYT14P1Q58G82 188 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 EEF1A1P5Q5VTE0 462 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 REEP3Q6NUK4 255 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 VWA1Q6PCB0 445 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 CADM2Q8N3J6 435 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 OSTF1Q92882 214 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 RNASE6Q93091 150 aaKnown RBP13.04□□□□□ -0.32
USP39-206ENST00000448971 OR5B2Q96R09 309 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 SLC39A3Q9BRY0 314 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 SPATA5L1Q9BVQ7 753 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 SPATA9Q9BWV2 254 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 POLDIP3Q9BY77 421 aaKnown RBP13.04□□□□□ -0.32
USP39-206ENST00000448971 PIGMQ9H3S5 423 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 TMEM38AQ9H6F2 299 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 COQ10BQ9H8M1 238 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 CTPS2Q9NRF8 586 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 CHRNA9Q9UGM1 479 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 CLEC4AQ9UMR7 237 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 EMC9Q9Y3B6 208 aa13.04□□□□□ -0.32
USP39-206ENST00000448971 LOC100653049A0A140TA62 436 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 SLC22A2O15244 555 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 EFNA2O43921 213 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 CCDC22O60826 627 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 TNFSF13O75888 250 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 KRT34O76011 436 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 ETS2P15036 469 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 CCNA2P20248 432 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 ADSLP30566 484 aaPredicted RBP13.03□□□□□ -0.32
USP39-206ENST00000448971 LSP1P33241 339 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 HTR3AP46098 478 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 GYS2P54840 703 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 CTBP2P56545 445 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 COPZ1P61923 177 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 FOXD4Q12950 439 aaPredicted RBP13.03□□□□□ -0.32
USP39-206ENST00000448971 SNTB1Q13884 538 aaKnown RBP13.03□□□□□ -0.32
USP39-206ENST00000448971 CYLC2Q14093 348 aaPredicted RBP13.03□□□□□ -0.32
USP39-206ENST00000448971 ZSWIM7Q19AV6 140 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 TUSC1Q2TAM9 212 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 COQ5Q5HYK3 327 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 ZNF550Q7Z398 422 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 ZZZ3Q8IYH5 903 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 PCYOX1LQ8NBM8 494 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 C11orf65Q8NCR3 313 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 HIPK4Q8NE63 616 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 ELAC2Q9BQ52 826 aaKnown RBP13.03□□□□□ -0.32
USP39-206ENST00000448971 CCDC106Q9BWC9 280 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 RBM24Q9BX46 236 aaKnown RBP13.03□□□□□ -0.32
USP39-206ENST00000448971 SRXN1Q9BYN0 137 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 RASSF1Q9NS23 344 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 FOXD3Q9UJU5 478 aaPredicted RBP13.03□□□□□ -0.32
USP39-206ENST00000448971 SLC13A4Q9UKG4 626 aa13.03□□□□□ -0.32
USP39-206ENST00000448971 PCNX3Q9H6A9 2034 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 SYT5O00445 386 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 FAAHO00519 579 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 FRS3O43559 492 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 FOSL1P15407 271 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 TACR3P29371 465 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 PRKAR1BP31321 381 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 PEX19P40855 299 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 POLR2HP52434 150 aaKnown RBP13.02□□□□□ -0.33
USP39-206ENST00000448971 NCALDP61601 193 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 ADAM8P78325 824 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 FBXL19-AS1Q494R0 122 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 CPLX4Q7Z7G2 160 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 POU5F2Q8N7G0 328 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 RNF128Q8TEB7 428 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 ROBO4Q8WZ75 1007 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 DNAJA3Q96EY1 480 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 GMPPAQ96IJ6 420 aaPredicted RBP13.02□□□□□ -0.33
USP39-206ENST00000448971 ZNF607Q96SK3 696 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 GPATCH1Q9BRR8 931 aaKnown RBP13.02□□□□□ -0.33
USP39-206ENST00000448971 KRTAP3-3Q9BYR6 98 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 KRTAP3-2Q9BYR7 98 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 GALNT8Q9NY28 637 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 PROCRQ9UNN8 238 aa13.02□□□□□ -0.33
USP39-206ENST00000448971 DOCK7Q96N67 2140 aa13.01□□□□□ -0.33
USP39-206ENST00000448971 TMED7-TICAM2A0A0A6YYA0 188 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms