RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 KLHL28Q9NXS3 571 aa11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 KLHL13Q9P2N7 655 aa11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 OSGIN1Q9UJX0 560 aa11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 ING1Q9UK53 422 aaPredicted RBP11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 IFT52Q9Y366 437 aa11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 NDUFAF1Q9Y375 327 aa11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 TMED7Q9Y3B3 224 aa11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 TESMINQ9Y4I5 508 aa11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 SPIN1Q9Y657 262 aaPredicted RBP11.35□□□□□ -0.59
PRPF40A-203ENST00000448428 TMEM72A0PK05 275 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 EVPLLA8MZ36 301 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 C5orf58C9J3I9 102 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 CASKO14936 926 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 SMAD9O15198 467 aaKnown RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 CYTIPO60759 359 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 FESP07332 822 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 ARAFP10398 606 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 PRG2P13727 222 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 FKBP2P26885 142 aaKnown RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 DNAJA1P31689 397 aaKnown RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 CCKARP32238 428 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 CLK1P49759 484 aaKnown RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 POLR2HP52434 150 aaKnown RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 CSNK2A1P68400 391 aaPredicted RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 RASGEF1BQ0VAM2 473 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 SF3A3Q12874 501 aaKnown RBP eCLIP11.34□□□□□ -0.592e-7■□□□□ 8.8
PRPF40A-203ENST00000448428 ZSWIM7Q19AV6 140 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 HSP90B2PQ58FF3 399 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 ZNF311Q5JNZ3 666 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 GCNT6Q5T4J0 391 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 RNF220Q5VTB9 566 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 CGB2Q6NT52 195 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 ZNF550Q7Z398 422 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 MTDHQ86UE4 582 aaKnown RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 DPP10Q8N608 796 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 NFKBIDQ8NI38 313 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 BBS10Q8TAM1 723 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 TSPEARQ8WU66 669 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 ZNF775Q96BV0 537 aaPredicted RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 PSD2Q9BQI7 771 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 BCO1Q9HAY6 547 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 LEF1Q9UJU2 399 aaPredicted RBP11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 HDGFL3Q9Y3E1 203 aa11.34□□□□□ -0.59
PRPF40A-203ENST00000448428 CSMD2Q7Z408 3487 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ANGPT2O15123 496 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF208O43345 1280 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 PMS2P2O95744 297 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 HRGP04196 525 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 VIMP08670 466 aaKnown RBP11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 TROVE2P10155 538 aaKnown RBP eCLIP11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 UQCRBP14927 111 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ETS2P15036 469 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ARFIP2P53365 341 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 CDK6Q00534 326 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 POU4F3Q15319 338 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ADRM1Q16186 407 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 FBXW10Q5XX13 1052 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 WBP2NLQ6ICG8 309 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 REEP3Q6NUK4 255 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 STAC2Q6ZMT1 411 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 BEND4Q6ZU67 534 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 SERPINA11Q86U17 422 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 STK32CQ86UX6 486 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF300Q96RE9 604 aaPredicted RBP11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 CPPED1Q9BRF8 314 aaPredicted RBP11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 MED18Q9BUE0 208 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 TMEM38AQ9H6F2 299 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ARMC7Q9H6L4 198 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 CACYBPQ9HB71 228 aaKnown RBP11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 MED4Q9NPJ6 270 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 KLHL9Q9P2J3 617 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 PRDM4Q9UKN5 801 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 CORO2BQ9UQ03 480 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 TRAPPC4Q9Y296 219 aa11.33□□□□□ -0.6
PRPF40A-203ENST00000448428 ANKHD1Q8IWZ3 2542 aaKnown RBP11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 A0A1W2PPR1 153 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 ZC3H12DA2A288 527 aaKnown RBP11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF724A8MTY0 619 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF814B7Z6K7 855 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 FBP2O00757 339 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 SIAH2O43255 324 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 FRS3O43559 492 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 GOSR1O95249 250 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 IMPDH2P12268 514 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 CXCR1P25024 350 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 MAP2K6P52564 334 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 OR2B6P58173 313 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 HOXC5Q00444 222 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 SCARB2Q14108 478 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 SELPLGQ14242 412 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 TFAP2EQ6VUC0 442 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 DHDDSQ86SQ9 333 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 CADM2Q8N3J6 435 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 DDIT4LQ96D03 193 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 ZC3HAV1LQ96H79 300 aaKnown RBP11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 ANKRD27Q96NW4 1050 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 CGREF1Q99674 301 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 TACO1Q9BSH4 297 aaKnown RBP11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 CCDC134Q9H6E4 229 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms