RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 IL9P15248 144 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 ZNF3P17036 446 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 EDNRAP25101 427 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 MAP2K3P46734 347 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 OR4M1Q8NGD0 313 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 TXNDC15Q96J42 360 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 OR14A2Q96R54 314 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 MYEF2Q9P2K5 600 aaKnown RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 A0A075B6Q4 140 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 IGHV3-20A0A0C4DH32 117 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 SMAD9O15198 467 aaKnown RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 TOXO94900 526 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 RCBTB2O95199 551 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 EIF4EP06730 217 aaKnown RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 EIF2B5Q13144 721 aaKnown RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 KRR1Q13601 381 aaKnown RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 ACSM3Q53FZ2 586 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 METAP1DQ6UB28 335 aaPredicted RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 RDH10Q8IZV5 341 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 LINC00471Q8N535 108 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 OR5H6Q8NGV6 325 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 FLVCR1-AS1Q8TAF5 88 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 CITED4Q96RK1 184 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 GABRG3Q99928 467 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 CCDC32Q9BV29 185 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 ZNF350Q9GZX5 532 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 FKRPQ9H9S5 495 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 FOLH1BQ9HBA9 442 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 TRIM36Q9NQ86 728 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 UCKL1Q9NWZ5 548 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 ZNF222Q9UK12 451 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 TMEM184BQ9Y519 407 aaPredicted RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.33□□□□□ -0.43
VPS54-203ENST00000409558 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.33□□□□□ -0.43
VPS54-203ENST00000409558 KDM4EB2RXH2 506 aaPredicted RBP12.33□□□□□ -0.43
VPS54-203ENST00000409558 B4DXG7 233 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 AQP2P41181 271 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 TPBGQ13641 420 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 BCL2L15Q5TBC7 163 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 C19orf48Q6RUI8 117 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 UBQLNLQ8IYU4 475 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 TSLPQ969D9 159 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 ANKRD9Q96BM1 317 aaPredicted RBP12.33□□□□□ -0.43
VPS54-203ENST00000409558 ATF6BQ99941 703 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 ACOXLQ9NUZ1 547 aa12.33□□□□□ -0.43
VPS54-203ENST00000409558 ATXN7L1Q9ULK2 861 aaPredicted RBP12.33□□□□□ -0.43
VPS54-203ENST00000409558 GPR179Q6PRD1 2367 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 TMEM129A0AVI4 362 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 DUSP8Q13202 625 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 C16orf52Q8NHV5 167 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 AHCYL2Q96HN2 611 aaKnown RBP12.33□□□□□ -0.44
VPS54-203ENST00000409558 Q96M85 177 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 ABCG5Q9H222 651 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 CDCP1Q9H5V8 836 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 MCUBQ9NWR8 336 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 MLLT3P42568 568 aaPredicted RBP12.33□□□□□ -0.44
VPS54-203ENST00000409558 CSNK1EP49674 416 aaKnown RBP12.33□□□□□ -0.44
VPS54-203ENST00000409558 HTR4Q13639 388 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.33□□□□□ -0.442e-6■■□□□ 14.5
VPS54-203ENST00000409558 UXS1Q8NBZ7 420 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 MOSPD2Q8NHP6 518 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 SIGLEC7Q9Y286 467 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 TRBV2A0A0J9YWF9 115 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 LYRM1O43325 122 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 CDC40O60508 579 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS54-203ENST00000409558 PLAURQ03405 335 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 VWA2Q5GFL6 755 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 OR6F1Q8NGZ6 308 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 TRMT10AQ8TBZ6 339 aaKnown RBP12.33□□□□□ -0.44
VPS54-203ENST00000409558 HSD17B8Q92506 261 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 MSLNLQ96KJ4 702 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 ULBP3Q9BZM4 244 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 RNF121Q9H920 327 aa12.33□□□□□ -0.44
VPS54-203ENST00000409558 PRRC2CQ9Y520 2896 aaKnown RBP12.32□□□□□ -0.44
VPS54-203ENST00000409558 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 OIP5O43482 229 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 MT-ND5P03915 603 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 IGHV4-34P06331 123 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 CDC20Q12834 499 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 FZD2Q14332 565 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 FAAP20Q6NZ36 180 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 XKRXQ6PP77 449 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 GPR135Q8IZ08 494 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 GJD3Q8N144 294 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 POGLUT1Q8NBL1 392 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 DNAAF1Q8NEP3 725 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 TEKT2Q9UIF3 430 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 A0A0B4J293 547 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 AKR7A2O43488 359 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 SCO2O43819 266 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 PRKAR1AP10644 381 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 ZP2Q05996 745 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 GDPGP1Q6ZNW5 385 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 RTL4Q6ZR62 310 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 FAM210AQ96ND0 272 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 DERL3Q96Q80 235 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 SLC7A5P2Q9GIP4 190 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 TSPAN10Q9H1Z9 355 aaPredicted RBP12.32□□□□□ -0.44
VPS54-203ENST00000409558 Q9N2J8 555 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 FGF20Q9NP95 211 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms